Biological process to genes

Query process ID GO:0009058
Process name The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. H.G. Other DB
SOs04g0517900---0--O.I.H.G.
COs01g0178000AK120458.1-Aminotransferase, class I and II domain containingprotein1e+0At1g80360aminotransferase class I and II family proteinO.I.H.G.
COs01g0192900NM_189686.1-ACC synthase (EC 4.1.1.14) (Fragment)8e-7At4g26200ACS7O.I.H.G.
COs01g0633100AY028314.1-ADP-glucose pyrophosphorylase large subunit(Fragment)1e-3At2g21590APL4O.I.H.G.
COs01g0847200CB674427-Mannose-1-phosphate guanyltransferase (EC2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase)(GDP-mannose pyrophosphorylase) (NDP- hexosepyrophosphorylase)4e-37At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.
COs01g09287009629.m06954-Aminotransferase, class I and II domain containingprotein4e-18At5g23670LCB2O.I.H.G.
COs03g01836009631.m00798-Alanine aminotransferase5e-11At1g17290AlaAT1 (ALANINE AMINOTRANSFERAS)O.I.H.G.
COs03g0264400AK069180.1-Anthranilate synthase alpha 2 subunit4e-16At2g29690ASA2 (ANTHRANILATE SYNTHASE 2)O.I.H.G.
COs04g0578000AK064250.1-ACC synthase (EC 4.4.1.14)2e-2At5g65800ACS5 (ACC SYNTHASE 5)O.I.H.G.
COs04g0624600AK059368.1-Starch synthase III, chloroplast precursor (EC2.4.1.21) (SS III) (Soluble starch synthase III)6e-7At1g11720ATSS3 (starch synthase 3)O.I.H.G.
COs06g0130400AK065212.1-1-aminocyclopropane-1-carboxylate synthase familyprotein1e+0At1g62960ACS10 (ACC SYNTHASE 10)O.I.H.G.
COs07g0412100AY069940.1-Granule-bound starch synthase I, chloroplastprecursor (EC 2.4.1.21) (GBSS I)1e-10At1g32900starch synthase, putativeO.I.H.G.
COs10g01584009638.m00620-Chalcone synthase J (EC 2.3.1.74)(Naringenin-chalcone synthase J)9e+0At5g0480040S ribosomal protein S17 (RPS17D)O.I.H.G.
COs10g0168300---0--O.I.H.G.
COs10g01684009638.m00738--3e+0At2g17920nucleic acid binding / zinc ion bindingO.I.H.G.
COs10g01685009638.m00741--4e-1At3g22160VQ motif-containing proteinO.I.H.G.
COs10g0390500AK102488.1-Alanine aminotransferase1e-34At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.
COs10g0484800D50576.1--8e-4At1g02050chalcone and stilbene synthase family proteinO.I.H.G.
LOs01g0139200AK099060.1-Octicosapeptide/Phox/Bem1p domain containingprotein1e-1At2g01190octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.H.G.
LOs01g0142300AK060202.1-Glycosyl transferase, group 1 domain containingprotein1e-9At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.
LOs01g0266500AK101084.1-Phenazine biosynthesis PhzC/PhzF protein familyprotein9e+0At5g55570unknown proteinO.I.H.G.
LOs01g0333700NM_183890.1--1e+0At4g17310unknown proteinO.I.H.G.
LOs01g0653200AK110920.1-Glycosyl transferase, group 1 domain containingprotein9e-1At1g71910unknown proteinO.I.H.G.
LOs01g0736400AK069723.1-Aminotransferase, class I and II domain containingprotein7e-6At5g04620ATBIOF (BIOTIN F)O.I.H.G.
LOs01g0760600D10968.1-Aspartate aminotransferase, cytoplasmic (EC2.6.1.1) (Transaminase A)1e-3At1g62800ASP4 (ASPARTATE AMINOTRANSFERASE 4)O.I.H.G.
LOs01g0928800AK120617.1-Serine palmitoyltransferase2e-17At5g23670LCB2O.I.H.G.
LOs02g0173500AK070565.1-Cholinephosphate cytidylyltransferase4e-27At2g32260cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putativeO.I.H.G.
LOs02g0184400AK063433.1-Sucrose-phosphate synthase 9 (EC 2.4.1.14)2e-9At5g20280ATSPS1F (sucrose phosphate synthase 1F)O.I.H.G.
LOs02g0205500AK067907.1-Naringenin-chalcone synthase family protein7e-5At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.H.G.
LOs02g0225200---0--O.I.H.G.
LOs02g0236000BI797474-Aspartate aminotransferase (EC 2.6.1.1) (Fragment)2e+0At3g52620unknown proteinO.I.H.G.
LOs02g0273000AK119843.1-Uridine kinase-like protein1e-59At4g26510ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferaseO.I.H.G.
LOs02g0296800AK064811.1-Conserved hypothetical protein4e-1At3g22275unknown proteinO.I.H.G.
LOs02g0302400CA763909-1-aminocyclopropane-1-carboxylate synthase familyprotein6e-1At5g60370unknown proteinO.I.H.G.
LOs02g0302700AK060537.1-Nicotianamine aminotransferase A5e-5At5g36160aminotransferase-relatedO.I.H.G.
LOs02g0626600---0--O.I.H.G.
LOs02g0698000CB652033-Phosphoribulokinase, chloroplast precursor (EC2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK)1e-32At1g32060PRK (PHOSPHORIBULOKINASE)O.I.H.G.
LOs02g0708100AK059653.1-Carbamoyl-phosphate synthase small chain (EC6.3.5.5) (Carbamoyl- phosphate synthetase glutaminechain)3e-9At3g27740CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)O.I.H.G.
LOs02g0708200AK102236.1-Phosphoribulokinase/uridine kinase family protein1e-31At1g73980phosphoribulokinase/uridine kinase family proteinO.I.H.G.
LOs02g0709200AK058999.1-Histidinol-phosphate aminotransferase, chloroplastprecursor (EC 2.6.1.9) (Imidazole acetol-phosphatetransaminase)2e-8At5g10330HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)O.I.H.G.
LOs02g07319009630.m04890-Naringenin-chalcone synthase family protein1e-2At1g68530KCS6 (3-KETOACYL-COA SYNTHASE 6)O.I.H.G.
LOs02g0797500AK072426.1-Plastidic aspartate aminotransferase3e-56At4g31990ASP5 (ASPARTATE AMINOTRANSFERASE 5)O.I.H.G.
LOs02g0806900AK105851.1-Aminotransferase, class I and II domain containingprotein2e-17At4g36480ATLCB1 (LONG-CHAIN BASE1)O.I.H.G.
LOs02g0812400AK119450.1-Nucleotidyl transferase domain containing protein8e-21At2g34970eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinO.I.H.G.
LOs02g0813600AK107210.1-Naringenin-chalcone synthase family protein6e-2At1g07720KCS3 (3-KETOACYL-COA SYNTHASE 3)O.I.H.G.
LOs02g0831500AK061268.1-Sucrose synthase (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase) (Fragment)3e+0At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.
LOs03g0181500AK119228.1-Beta-ketoacyl-CoA synthase7e-5At2g26250KCS10 (3-KETOACYL-COA SYNTHASE 10)O.I.H.G.
LOs03g0195100AY338236.1-Aminotransferase, class I and II domain containingprotein3e+0At5g37550unknown proteinO.I.H.G.
LOs03g0208900AK070806.1-Nucleotidyl transferase domain containing protein2e-26At2g04650ADP-glucose pyrophosphorylase family proteinO.I.H.G.
LOs03g0263600AK100452.1-Strictosidine synthase family protein1e-2At3g59530strictosidine synthase family proteinO.I.H.G.
LOs03g0265100AK105267.1-Glycosyl transferase, group 1 domain containingprotein1e-6At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.
LOs03g0268400AK121972.1-Mannose-1-phosphate guanyltransferase (EC2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase)(GDP-mannose pyrophosphorylase) (NDP- hexosepyrophosphorylase)3e-28At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.
LOs03g0299900AK069075.1-Aminotransferase, class I and II domain containingprotein4e-12At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)O.I.H.G.
LOs03g03821009631.m02606-Naringenin-chalcone synthase family protein7e-1At2g28630KCS12 (3-KETOACYL-COA SYNTHASE 12)O.I.H.G.
LOs03g0383600AK071506.1-Conserved hypothetical protein8e-1At1g07720KCS3 (3-KETOACYL-COA SYNTHASE 3)O.I.H.G.
LOs03g0585600---0--O.I.H.G.
LOs03g06728009631.m04566--1e+1At4g25410DNA binding / transcription factorO.I.H.G.
LOs03g0677000---0--O.I.H.G.
LOs03g0718000AK105178.1-Anthranilate synthase beta subunit (EC 4.1.3.27)(At1g25220)3e-9At1g25220ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)O.I.H.G.
LOs03g0735000AK105092.1-ADP-glucose pyrophosphorylase large subunit (EC2.7.7.27)4e-10At5g19220APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)O.I.H.G.
LOs03g0750700AK111876.1-Strictosidine synthase family protein9e-4At1g08470strictosidine synthase family proteinO.I.H.G.
LOs03g0805100AB007501.1-Squalene synthase (EC 2.5.1.21)2e-14At4g34640SQS1 (SQUALENE SYNTHASE 1)O.I.H.G.
LOs03g0826500AB022602.1-Anthranilate synthase alpha 1 subunit5e-9At5g05730ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)O.I.H.G.
LOs04g0463500AK107879.1-Anthranilate synthase beta subunit (EC 4.1.3.27)(At1g25220)6e-13At1g25220ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)O.I.H.G.
LOs04g0518200AK072373.1-Conserved hypothetical protein2e+0At3g59400GUN4O.I.H.G.
LOs04g0518400AK067801.1-Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)4e-22At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.
LOs05g02125009633.m01086--2e+0At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.
LOs05g0212600---0--O.I.H.G.
LOs05g02129009633.m01088-Chalcone synthase J (EC 2.3.1.74)(Naringenin-chalcone synthase J)4e+1At5g22170unknown proteinO.I.H.G.
LOs05g0213100---0--O.I.H.G.
LOs05g0319200---0--O.I.H.G.
LOs05g0417000---0--O.I.H.G.
LOs05g0427400---0--O.I.H.G.
LOs05g0533600AY373258.1-Glycosyl transferase, group 1 domain containingprotein5e-7At4g18240ATSS4O.I.H.G.
LOs05g0568000---0--O.I.H.G.
LOs05g0574600AK070754.1-Fatty acid elongase 1-like protein3e-13At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.H.G.
LOs05g0580000D50317.1-Glucose-1-phosphate adenylyltransferase largesubunit 1, chloroplast precursor (EC 2.7.7.27)(ADP-glucose synthase) (ADP-glucose pyrophosphorylase)(AGPASE S) (Alpha-D-glucose-1-phosphate adenyltransferase) (BEPL)9e-14At2g21590APL4O.I.H.G.
LOs06g0260500---0--O.I.H.G.
LOs06g0262200---0--O.I.H.G.
LOs06g0262800---0--O.I.H.G.
LOs06g02634009634.m01526-Naringenin-chalcone synthase family protein1e-2At2g26640KCS11 (3-KETOACYL-COA SYNTHASE 11)O.I.H.G.
LOs06g0331400---0--O.I.H.G.
LOs06g0338900AK100837.1-Nucleotidyl transferase domain containing protein6e-2At5g19485transferaseO.I.H.G.
LOs06g0345200AK107186.1-Nicotianamine aminotransferase B2e-7At5g53970aminotransferase, putativeO.I.H.G.
LOs06g0548000D67043.1-Mitochondrial aspartate aminotransferase precursor(EC 2.6.1.1)4e-46At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)O.I.H.G.
LOs06g0598800AK101377.1-Fatty acid elongase 1-like protein1e-28At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.H.G.
LOs06g06234009634.m04036--2e+0At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.
LOs06g0623500---0--O.I.H.G.
LOs06g0623700---0--O.I.H.G.
LOs06g0643800AK071732.1-Sucrose-phosphate synthase 7 (EC 2.4.1.14)(Fragment)1e-2At2g14860peroxisomal membrane protein 22 kDa, putativeO.I.H.G.
LOs06g0699700AK059492.1-Aminodeoxychorismate synthase/glutamineamidotransferase9e-10At2g28880emb1997 (embryo defective 1997)O.I.H.G.
LOs06g0729000AK059535.1-Phytoene synthase (EC 2.5.1.-)1e-6At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.
LOs07g0108300AK060835.1-Alanine aminotransferase4e-22At1g23310GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)O.I.H.G.
LOs07g0179400---0--O.I.H.G.
LOs07g0200700AK063341.1-Squalene synthase2e-23At4g34640SQS1 (SQUALENE SYNTHASE 1)O.I.H.G.
LOs07g0214900---0--O.I.H.G.
LOs07g0243150---0--O.I.H.G.
LOs07g0298900AK064565.1-Heavy metal transport/detoxification proteindomain containing protein4e-2At3g48970copper-binding family proteinO.I.H.G.
LOs07g0501100AK110924.1-Chalcone synthase (EC 2.3.1.74)(Naregenin-chalcone synthase)2e-1At2g14247Expressed proteinO.I.H.G.
LOs07g0525900---0--O.I.H.G.
LOs07g0526400BI806666-Chalcone synthase (EC 2.3.1.74)(Naringenin-chalcone synthase)4e+0At3g21920pollen coat receptor kinase, putativeO.I.H.G.
LOs07g05436009635.m05023-Strictosidine synthase family protein8e+0At5g54145unknown proteinO.I.H.G.
LOs07g0543900---0--O.I.H.G.
LOs07g0544400---0--O.I.H.G.
LOs07g0544500---0--O.I.H.G.
LOs07g0614000AK109489.1-Strictosidine synthase family protein3e+0At5g66090unknown proteinO.I.H.G.
LOs08g0161800NM_189095.1-Cholinephosphate cytidylyltransferase4e-10At2g32260cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putativeO.I.H.G.
LOs08g0175000---0--O.I.H.G.
LOs08g0301500AK101676.1-Sucrose-phosphate synthase 2 (EC 2.4.1.14)(Fragment)2e-31At5g20280ATSPS1F (sucrose phosphate synthase 1F)O.I.H.G.
LOs08g0322600AK069839.1-UbiA prenyltransferase family protein1e-9At4g23660AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1)O.I.H.G.
LOs08g0442200AK073494.1-Strictosidine synthase family protein4e-2At2g31160LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)O.I.H.G.
LOs08g0500900AK102314.1--3e+0At4g18400unknown proteinO.I.H.G.
LOs08g0530000AK065712.1-Uridine-cytidine kinase 2 (EC 2.7.1.48) (UCK 2)(Uridine monophosphokinase 2) (Cytidine monophosphokinase2)5e-52At3g27190uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeO.I.H.G.
LOs09g0296700AK121536.1-Glycosyl transferase, group 1 domain containingprotein7e-8At3g10630glycosyl transferase family 1 proteinO.I.H.G.
LOs09g0298200AY028315.1-ADP-glucose pyrophosphorylase small subunit4e-31At5g48300ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)O.I.H.G.
LOs09g0373200AK109686.1-Strictosidine synthase family protein2e-1At5g20540ATBRXL4 (BREVIS RADIX-LIKE 4)O.I.H.G.
LOs09g0373500---0--O.I.H.G.
LOs09g0433900AK107237.1-Alanine aminotransferase4e-3At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.
LOs09g0453800AK120288.1-1-aminocyclopropane-1-carboxylate synthase familyprotein2e-14At1g77670aminotransferase class I and II family proteinO.I.H.G.
LOs10g01581009638.m00617-Senescence-associated protein 152e-8At1g01120KCS1 (3-KETOACYL-COA SYNTHASE 1)O.I.H.G.
LOs10g0189600AK100991.1-Aminotransferase, class I and II domain containingprotein1e-12At4g36480ATLCB1 (LONG-CHAIN BASE1)O.I.H.G.
LOs10g0472900AK120294.1-Naringenin-chalcone synthase family protein3e-2At1g07720KCS3 (3-KETOACYL-COA SYNTHASE 3)O.I.H.G.
LOs10g0484700AK067463.1-1-aminocyclopropane-1-carboxylate synthase familyprotein3e+0At5g13900protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.
LOs10g0543500AK106264.1-Mucin-like protein9e-1At5g40620unknown proteinO.I.H.G.
LOs10g0548900AK067162.1-Cytoplasmic peptidoglycan synthetase, N-terminaldomain containing protein3e-7At1g63680MUREO.I.H.G.
LOs10g0563000AK072479.1-Palmitoyl protein thioesterase family protein1e-2At3g60340palmitoyl protein thioesterase family proteinO.I.H.G.
LOs10g0578900AK073939.1-Cholinephosphate cytidylyltransferase3e-15At2g32260cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putativeO.I.H.G.
LOs12g0109900AB036988.1-Double-stranded RNA binding domain containingprotein6e-2At2g28380DRB2 (DSRNA-BINDING PROTEIN 2)O.I.H.G.
LOs12g0210800AK072548.1-2-dehydro-3-deoxyphosphooctonate aldolase (EC2.5.1.55) (Phospho-2- dehydro-3-deoxyoctonate aldolase)(3-deoxy-D-manno-octulosonic acid 8- phosphatesynthetase) (KDO-8-phosphate synthetase) (KDO 8-Psynthase) (KDOPS)6e-72At1g795002-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)O.I.H.G.
LOs12g0626400AK063967.1-Squalene/phytoene synthase family protein7e-10At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00081520The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.



The lower GO terms

Process ID Gene number Process name
GO:00067230The chemical reactions and pathways resulting in the formation of hydrocarbons that make up the cuticle, the outer layer of some animals and plants, which acts to prevent water loss.
GO:00086104The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO:00090590The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:001605117The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
GO:00424460The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone.
GO:00440340Any biosynthetic process - chemical reactions and pathways resulting in the formation of substances - which involves more than one organism.
GO:00442490The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
GO:00442740The chemical reactions and pathways resulting in the formation of substances in multicellular organisms, occurring at the tissue, organ, or organismal level.
GO:00461480The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.
GO:00461650The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.





Comparison with co-expressed genes



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