Biological process to genes

Query process ID GO:0008380
Process name The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. H.G. Other DB
LOs01g0256900AK100819.1-SmX6 protein5e-38At5g27720emb1644 (embryo defective 1644)O.I.H.G.
LOs02g0102700AK061193.1-Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3)8e-9At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.
LOs02g0126700AK063621.1-Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE)2e-11At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.
LOs02g0510100AK058487.1-The start codon is not identified.6e-18At2g43810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeO.I.H.G.
LOs02g0586500AK101525.1-Small nuclear ribonucleoprotein Sm D1 (snRNP coreprotein D1) (Sm-D1) (Sm-D autoantigen)7e-12At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.
LOs03g0410900---0--O.I.H.G.
LOs04g0470200CA763570-Small nuclear ribonucleoprotein (Sm protein)family protein1e-17At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.
LOs05g0314100AK121220.1-Small nuclear ribonucleoprotein (Sm protein)family protein6e-46At2g47640small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeO.I.H.G.
LOs05g0389300AK059190.1-Small nuclear ribonucleoprotein (Sm protein)family protein2e-6At5g48870SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)O.I.H.G.
LOs05g0594900AK121070.1-U6 snRNA-associated Sm-like protein LSm81e+0At1g65700small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.
LOs06g0634100AK073917.1-Intron maturase, type II family protein6e-3At1g74350intron maturase, type II family proteinO.I.H.G.
LOs07g0571900BM421837-Prp18 domain containing protein3e+0At1g11925-O.I.H.G.
LOs07g0608700AK120837.1-Small nuclear ribonucleoprotein G (snRNP-G) (Smprotein G) (Sm-G) (SmG)9e-14At3g11500small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putativeO.I.H.G.
LOs08g0154700CF324539-Small nuclear ribonucleoprotein (Sm protein)family protein9e-24At1g03330small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putativeO.I.H.G.
LOs08g0177700AK121665.1-U6 snRNA-associated Sm-like protein LSm78e-5At2g03870small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.
LOs10g0567500AK072336.1-Intron maturase, type II family protein4e-7At5g46920intron maturase, type II family proteinO.I.H.G.
LOs11g0657300AK062752.1-Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF)2e-26At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:000639637Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.



The lower GO terms

Process ID Gene number Process name
GO:00003750Splicing of RNA via a series of two transesterification reactions.
GO:00003940Splicing of RNA via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.
GO:00342470The process of removing sections of a primary snoRNA transcript to remove sequences not present in the mature form of the snoRNA and joining the remaining sections to form the mature form of the snoRNA.





Comparison with co-expressed genes



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