CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0008299

Process name The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. H.G. Other DB
C Os07g0546000 AK065871.1 - Isopentenyl pyrophosphate:dimethyllallylpyrophosphate isomerase (EC 5.3.3.2) (Fragment) 1e-32 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) O.I. H.G.
L Os01g0703400 D85317.1 - Farnesyl pyrophosphate synthetase (FPP synthetase)(FPS) (Farnesyl diphosphate synthetase) [Includes:Dimethylallyltranstransferase (EC 2.5.1.1) 1e-24 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) O.I. H.G.
L Os02g0117100 AK064929.1 - Conserved hypothetical protein 2e-7 At1g73060 unknown protein O.I. H.G.
L Os02g0668100 AK106165.1 - Polyprenyl synthetase family protein 2e-1 At4g18620 - O.I. H.G.
L Os02g0793300 AK072317.1 - Isopentenyl-diphosphate delta-isomerase familyprotein 2e-21 At1g79690 atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3) O.I. H.G.
L Os04g0657000 - - - 0 - - O.I. H.G.
L Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) O.I. H.G.
L Os05g0413400 AK060336.1 - Isopentenyl diphosphate isomerase 1 7e-16 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) O.I. H.G.
L Os05g0543400 AK100273.1 - Farnesyl diphosphate synthase (Fragment) 9e-16 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) O.I. H.G.
L Os07g0580900 AK121529.1 - GGDP synthase 1e-2 At3g14510 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative O.I. H.G.

The upper GO terms

Process ID Gene number Process name
GO:0006720 0 The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO:0008610 4 The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO:0044249 0 The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.

The lower GO terms

Process ID Gene number Process name
GO:0009240 0 The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
GO:0016091 0 The chemical reactions and pathways resulting in the formation of prenols, isoprenoids of general formula (H-CH2-C(CH3)=CH-CH2-)n-OH, any primary monohydroxy alcohol whose carbon skeleton consists of two or more isoprenoid residues linked head to tail.
GO:0016114 10 The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
GO:0035238 0 The chemical reactions and pathways resulting in the formation of any of the vitamin A compounds, retinol, retinal (retinaldehyde) and retinoic acid. Animals can not synthesize vitamin A de novo, but form it through oxidative cleavage of carotenoids.
GO:0043612 0 The chemical reactions and pathways resulting in the formation of isoprene, C5H8.
GO:0046246 0 The chemical reactions and pathways resulting in the formation of terpenes, any of a large group of hydrocarbons made up of isoprene units.

Comparison with co-expressed genes

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