Biological process to genes

Query process ID GO:0007242
Process name A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. H.G. Other DB
COs07g0609600---0--O.I.H.G.
COs07g0610100---0--O.I.H.G.
COs07g0610700---0--O.I.H.G.
LOs01g0549500AK070641.1-Phox-like domain containing protein1e-3At3g48195phox (PX) domain-containing proteinO.I.H.G.
LOs03g0415200AK064733.1-MAP3K protein kinase-like protein5e-2At1g13680phospholipase C/ phosphoric diester hydrolaseO.I.H.G.
LOs03g0425300AK059684.1-Diacylglycerol kinase, catalytic region domaincontaining protein6e-14At5g07920DGK1 (DIACYLGLYCEROL KINASE1)O.I.H.G.
LOs03g0579000AK072995.1-Peptidase M50 family protein8e-1At1g05140membrane-associated zinc metalloprotease, putativeO.I.H.G.
LOs04g0689500AK060983.1-Conserved hypothetical protein7e-1At5g60615-O.I.H.G.
LOs05g0127200AK064924.1-Phosphoinositide-specific phospholipase C (PLC)family protein8e-2At3g47220phosphoinositide-specific phospholipase C family proteinO.I.H.G.
LOs05g0346100---0--O.I.H.G.
LOs05g0534500AK107145.1-Heavy metal transport/detoxification proteindomain containing protein3e+0At3g62690ATL5 (ATL5)O.I.H.G.
LOs05g0583500D43360-PX-associated domain containing protein4e+0At4g00355unknown proteinO.I.H.G.
LOs06g0224200AK067986.1-Glutaredoxin domain containing protein9e-2At4g08550electron carrier/ protein disulfide oxidoreductaseO.I.H.G.
LOs06g0643000AK067701.1-Hydroxyproline-rich glycoprotein DZ-HRGP precursor3e-11At4g32160phox (PX) domain-containing proteinO.I.H.G.
LOs07g0171100AK066475.1-TPR-like domain containing protein2e-16At1g55480binding / protein bindingO.I.H.G.
LOs07g06095009635.m04190--2e-3At4g09462-O.I.H.G.
LOs07g0609800---0--O.I.H.G.
LOs07g0610200---0--O.I.H.G.
LOs07g0611400---0--O.I.H.G.
LOs07g0611500---0--O.I.H.G.
LOs07g0694000AF332874.1-Phosphoinositide-specific phospholipase C8e-8At2g40116phosphoinositide-specific phospholipase C family proteinO.I.H.G.
LOs08g0162600AK060121.1-Rubredoxin-type Fe(Cys)4 protein family protein6e-22At5g17170ENH1 (enhancer of sos3-1)O.I.H.G.
LOs09g0115600AK060378.1-Phosphatidylinositol-specific phospholipase C, Xregion domain containing protein6e-8At5g67130phospholipase C/ phosphoric diester hydrolaseO.I.H.G.
LOs09g0134500AK074022.1-Trithorax-like protein 11e-26At1g05830ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2)O.I.H.G.
LOs09g0535900AK061726.1-Phosphatidylinositol-specific phospholipase C, Xregion domain containing protein2e-8At4g386901-phosphatidylinositol phosphodiesterase-relatedO.I.H.G.
LOs12g0562400AJ276277.2-Phospholipase C (Fragment)1e-11At2g40116phosphoinositide-specific phospholipase C family proteinO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:000716562The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.



The lower GO terms

Process ID Gene number Process name
GO:00069840Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation.
GO:00072430A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound.
GO:00072630A series of molecular signals mediated by the detection of nitric oxide (NO).
GO:000726449Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:00097550A series of molecular signals mediated by the detection of a hormone.
GO:00097560A series of molecular signals mediated by the detection of carbohydrate.
GO:00097850The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.
GO:00098630A series of molecular signals mediated by salicylic acid.
GO:00098671A series of molecular signals mediated by jasmonic acid.
GO:00098700A series of molecular signals that depends upon R-genes and is activated during defense response.
GO:00100170The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
GO:00100190The process by which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis.
GO:00102040A series of molecular signals that is activated during defense response and does not depend upon R-genes.
GO:00108500A series of reactions within the cell that occur as a result of a single trigger reaction or compound interacting with a chemoreceptor resulting in a modulation of the force with which blood travels through the circulatory system. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions.
GO:00199320A series of molecular signals in which an ion or small molecule is formed or released into the cytosol, thereby helping relay the signal within the cell.
GO:00305220Any series of molecular signals initiated by a ligand entering the target cell, where it binds to an intracellular receptor.
GO:00310980A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals.
GO:00319290A series of molecular signals mediated by TOR (Target of rapamycin) proteins, members of the phosphoinositide (PI) 3-kinase related kinase (PIKK) family that act as serine/threonine kinases in response to nutrient availability or growth factors.
GO:00319300A series of molecular signals that forms a pathway of communication from the mitochondria to the nucleus and initiates cellular changes in response to changes in mitochondrial function.
GO:00427700A cascade of processes induced by the detection of DNA damage within a cell.
GO:00550950A series of molecular signals mediated by the detection of lipoprotein.





Comparison with co-expressed genes



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