Biological process to genes

Query process ID GO:0007242
Process name A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
CAt1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.H.G.
CAt1g15240838091phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:unknown;MFPOBO.I.H.G.
CAt2g15900816086phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFPOO.I.H.G.
CAt2g25350817073phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:unknown;MOFBPAVO.I.H.G.
CAt2g29900817540presenilin family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPAO.I.H.G.
CAt2g40116818602phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPO.I.H.G.
CAt3g15920820835phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:unknown;MOBFPAVO.I.H.G.
CAt3g47220823875phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:unknown;MPOFO.I.H.G.
CAt3g47290823882phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:unknown;MPOFO.I.H.G.
CAt3g48195823976phox (PX) domain-containing proteinF:protein binding, phosphoinositide binding;P:intracellular signaling cascade, cell communication;C:unknown;MOPBFO.I.H.G.
CAt3g57680824937peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPMO.I.H.G.
CAt4g17740827495C-terminal processing protease, putativeF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen;OBPMO.I.H.G.
CAt5g06140830501SNX1 (SORTING NEXIN 1)Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.O.I.H.G.
CAt5g07120830603SNX2b (SORTING NEXIN 2b)F:protein binding, phosphoinositide binding;P:intracellular signaling cascade, cell communication;C:cellular_component unknown;MFOPBAO.I.H.G.
CAt5g46390834682peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:thylakoid lumen, chloroplast thylakoid lumen;BOMPO.I.H.G.
CAt5g5795083590626S proteasome regulatory subunit, putativeF:protein binding;P:intracellular signaling cascade;C:proteasome regulatory particle;MOFBPO.I.H.G.
CAt5g58440835957SNX2a (SORTING NEXIN 2a)F:phosphoinositide binding;P:signal transduction, intracellular signaling cascade;C:cellular_component unknown;MFOPABO.I.H.G.
CAt5g58700835984phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MFOPO.I.H.G.
LAt1g12340837788-F:molecular_function unknown;P:intracellular signaling cascade;C:membrane;MFPOO.I.H.G.
LAt1g12390837794cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.
LAt1g13680837929phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.
LAt1g309253766857phospholipase CF:phospholipase C activity;P:intracellular signaling cascade, lipid metabolic process;C:cellular_component unknownO.I.H.G.
LAt1g44050841006DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt1g49740841397phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.
LAt1g501903767425-F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknownO.I.H.G.
LAt1g580373767562-F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.H.G.
LAt1g61840842481DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.H.G.
LAt1g62880842589cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.
LAt1g65180842825DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOO.I.H.G.
LAt2g02620814791DC1 domain-containing protein / PHD finger protein-relatedF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POMO.I.H.G.
LAt2g02680814797DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.H.G.
LAt2g02690814798protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PFMOO.I.H.G.
LAt2g19650816484DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:unknown;POMO.I.H.G.
LAt2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt2g21830816719DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.H.G.
LAt2g21840816720protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.H.G.
LAt2g21850816721protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt2g37800818357DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt2g42060818806CHP-rich zinc finger protein, putativeF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO.I.H.G.
LAt2g43220818923DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOBO.I.H.G.
LAt3g07000819885DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt3g08510819999ATPLC2 (PHOSPHOLIPASE C 2)Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.O.I.H.G.
LAt3g11920820365glutaredoxin-relatedF:electron carrier activity, protein disulfide oxidoreductase activity;P:intracellular signaling cascade, cell redox homeostasis;C:cellular_component unknown;BOMPFO.I.H.G.
LAt3g12180820395cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.
LAt3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POO.I.H.G.
LAt3g16020820847phospholipase CF:phospholipase C activity;P:intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;PO.I.H.G.
LAt3g19310821465phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.
LAt3g21210821674protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POMO.I.H.G.
LAt3g26240822226DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMBOFO.I.H.G.
LAt3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.H.G.
LAt3g27480822370DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt3g27500822372protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt3g28650822495DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt3g45530823694DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt3g46800823833DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt3g46810823834DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt3g55940824760phosphoinositide-specific phospholipase C, putativeF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPVO.I.H.G.
LAt4g01760828215DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g01910827105DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g01920828197DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g01925828202DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;POO.I.H.G.
LAt4g01930828198DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g02180827483DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g02190828115DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g10370826629DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.H.G.
LAt4g11390826743DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:unknown;POO.I.H.G.
LAt4g11540826758DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:endomembrane system;POMO.I.H.G.
LAt4g11550826759DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g12090826817cornichon family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:endomembrane system, membrane;MFPOO.I.H.G.
LAt4g139926240793-F:molecular_function unknown;P:intracellular signaling cascade;C:mitochondrion;POMO.I.H.G.
LAt4g14980827157-F:unknown;P:intracellular signaling cascade;C:unknown;POMFO.I.H.G.
LAt4g15070827170DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt4g160152745710DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt4g26380828744DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt4g349208296441-phosphatidylinositol phosphodiesterase-relatedF:phospholipase C activity, phosphoric diester hydrolase activity;P:triglyceride biosynthetic process, intracellular signaling cascade, lipid metabolic process, phospholipid biosynthetic process;C:cellular_component unknown;BMFPOO.I.H.G.
LAt4g349308296451-phosphatidylinositol phosphodiesterase-relatedF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:unknown;BMFPOO.I.H.G.
LAt4g369455008186phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.
LAt4g38530830010ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1)Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.O.I.H.G.
LAt4g386908300251-phosphatidylinositol phosphodiesterase-relatedF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPOO.I.H.G.
LAt5g01480831674DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt5g07920830686DGK1 (DIACYLGLYCEROL KINASE1)diacylglycerol kinaseO.I.H.G.
LAt5g22355832296DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt5g29624833061DC1 domain-containing proteinF:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.H.G.
LAt5g394716241265protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOO.I.H.G.
LAt5g40320834030DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.H.G.
LAt5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt5g43040834319DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.H.G.
LAt5g44770834506DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.H.G.
LAt5g54020835485zinc ion bindingF:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.H.G.
LAt5g54030835486DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.
LAt5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt5g54050835488DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.
LAt5g55780835672DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFOO.I.H.G.
LAt5g55800835674DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.H.G.
LAt5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPO.I.H.G.
LAt5g59930836115DC1 domain-containing protein / UV-B light-insensitive protein, putativeF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMFO.I.H.G.
LAt5g59940836116DC1 domain-containing protein / UV-B light-insensitive protein, putativeF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFBO.I.H.G.
LAt5g67130836848phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:anchored to plasma membrane, plasma membrane;FPOBMO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00071650The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.



The lower GO terms

Process ID Gene number Process name
GO:00069840Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation.
GO:00072434A series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound.
GO:00072632A series of molecular signals mediated by the detection of nitric oxide (NO).
GO:000726460Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:00097554A series of molecular signals mediated by the detection of a hormone.
GO:00097560A series of molecular signals mediated by the detection of carbohydrate.
GO:00097857The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.
GO:000986317A series of molecular signals mediated by salicylic acid.
GO:000986727A series of molecular signals mediated by jasmonic acid.
GO:000987014A series of molecular signals that depends upon R-genes and is activated during defense response.
GO:001001723The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
GO:00100193The process by which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis.
GO:001020411A series of molecular signals that is activated during defense response and does not depend upon R-genes.
GO:00108500A series of reactions within the cell that occur as a result of a single trigger reaction or compound interacting with a chemoreceptor resulting in a modulation of the force with which blood travels through the circulatory system. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions.
GO:00199320A series of molecular signals in which an ion or small molecule is formed or released into the cytosol, thereby helping relay the signal within the cell.
GO:00305220Any series of molecular signals initiated by a ligand entering the target cell, where it binds to an intracellular receptor.
GO:00310980A series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays one or more of the signals.
GO:00319290A series of molecular signals mediated by TOR (Target of rapamycin) proteins, members of the phosphoinositide (PI) 3-kinase related kinase (PIKK) family that act as serine/threonine kinases in response to nutrient availability or growth factors.
GO:00319303A series of molecular signals that forms a pathway of communication from the mitochondria to the nucleus and initiates cellular changes in response to changes in mitochondrial function.
GO:00427700A cascade of processes induced by the detection of DNA damage within a cell.
GO:00550950A series of molecular signals mediated by the detection of lipoprotein.





Comparison with co-expressed genes



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