Biological process to genes

Query process ID GO:0007049
Process name The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt3g11520820325CYCB1Encodes a B-type mitotic cyclin.O.I.H.G.
CAt1g02980839415CUL2 (CULLIN 2)encodes an Arabidopsis cullinO.I.H.G.
CAt1g26830839226ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.O.I.H.G.
CAt1g69670843303CUL3B (CULLIN 3B)cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.O.I.H.G.
CAt1g78770844213cell division cycle family proteinF:binding;P:cell cycle;C:cellular_component unknown;BOMAFPO.I.H.G.
CAt2g27970817341CKS2 (CDK-subunit 2)F:cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity;P:cell cycle;C:cellular_component unknown;MFOPO.I.H.G.
CAt3g16320820879CDC27aSubunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic progression and cell differentiation during the entire life cycle.O.I.H.G.
CAt3g48150823970APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8)anaphase-promoting complex or cyclosome subunitO.I.H.G.
CAt4g02570825648ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.O.I.H.G.
CAt5g46210834663CUL4 (CULLIN4)Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.O.I.H.G.
LAt1g77620844097nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding;P:DNA repair, cell cycle;C:nucleus;MFOAPVO.I.H.G.
LAt3g02820821018zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:cell cycle, replication fork protection, response to DNA damage stimulus;C:nucleus, chloroplast;MFPOBVO.I.H.G.
LAt4g30820829205cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-relatedF:molecular_function unknown;P:cell cycle;C:nucleus;MFPOO.I.H.G.
LAt4g30825829206pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:cell cycle;C:nucleus;POMFBAO.I.H.G.
LAt5g35520833516MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.O.I.H.G.
LAt5g50110835075-F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPMO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00099875Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.



The lower GO terms

Process ID Gene number Process name
GO:00002783Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
GO:00071130A cell cycle in which chromosomes are replicated and sister chromatids separate, but neither spindle formation nor nuclear membrane breakdown, and nuclear division does not occur, resulting in an increased number of chromosomes in the cell.
GO:00163300A discrete cell cycle that occurs during the third instar eye imaginal disc after progression of the morphogenetic furrow. It is essential for generation of a sufficient pool of uncommitted cells to develop complete ommatidia.
GO:00224020A cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.
GO:00332770A cell cycle in which mitosis is begun and progresses normally through the end of anaphase, but not completed, resulting in a cell with increased ploidy.
GO:00513210Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell.





Comparison with co-expressed genes



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