Biological process to genes

Query process ID GO:0006397
Process name Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. H.G. Other DB
LOs02g0102700AK061193.1-Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3)8e-9At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.
LOs02g0126700AK063621.1-Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE)2e-11At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.
LOs02g0510100AK058487.1-The start codon is not identified.6e-18At2g43810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeO.I.H.G.
LOs02g0586500AK101525.1-Small nuclear ribonucleoprotein Sm D1 (snRNP coreprotein D1) (Sm-D1) (Sm-D autoantigen)7e-12At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.
LOs02g0827300AK069159.1-Protein of unknown function DUF382 domaincontaining protein7e-36At4g21660proline-rich spliceosome-associated (PSP) family proteinO.I.H.G.
LOs05g0314100AK121220.1-Small nuclear ribonucleoprotein (Sm protein)family protein6e-46At2g47640small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeO.I.H.G.
LOs05g0389300AK059190.1-Small nuclear ribonucleoprotein (Sm protein)family protein2e-6At5g48870SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)O.I.H.G.
LOs05g0594900AK121070.1-U6 snRNA-associated Sm-like protein LSm81e+0At1g65700small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.
LOs07g0608700AK120837.1-Small nuclear ribonucleoprotein G (snRNP-G) (Smprotein G) (Sm-G) (SmG)9e-14At3g11500small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putativeO.I.H.G.
LOs08g0154700CF324539-Small nuclear ribonucleoprotein (Sm protein)family protein9e-24At1g03330small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putativeO.I.H.G.
LOs08g0177700AK121665.1-U6 snRNA-associated Sm-like protein LSm78e-5At2g03870small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.
LOs08g0416400AK064144.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-1At1g62240unknown proteinO.I.H.G.
LOs11g0657300AK062752.1-Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF)2e-26At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.

The upper GO terms

Process ID Gene number Process name
GO:000639637Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:00160712The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.

The lower GO terms

Process ID Gene number Process name
GO:00003982The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:00063701Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
GO:00063790Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
GO:00102390Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs.
GO:00309690The spliceosome-independent cleavage and ligation of the mRNA encoding a UFP-specific transcription factor to remove a single intron, thereby increasing both the translational efficiency of the processed mRNA and the activity of the protein it encodes.
GO:00311241Any process involved in forming the mature 3' end of an mRNA molecule.
GO:00314260The conversion of a primary mRNA transcript containing more than one complete protein-coding region into individual mature mRNA molecules.

Comparison with co-expressed genes

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