CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0006397

Process name Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. H.G. Other DB
L Os02g0102700 AK061193.1 - Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3) 8e-9 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G.
L Os02g0126700 AK063621.1 - Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE) 2e-11 At2g18740 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative O.I. H.G.
L Os02g0510100 AK058487.1 - The start codon is not identified. 6e-18 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative O.I. H.G.
L Os02g0586500 AK101525.1 - Small nuclear ribonucleoprotein Sm D1 (snRNP coreprotein D1) (Sm-D1) (Sm-D autoantigen) 7e-12 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G.
L Os02g0827300 AK069159.1 - Protein of unknown function DUF382 domaincontaining protein 7e-36 At4g21660 proline-rich spliceosome-associated (PSP) family protein O.I. H.G.
L Os03g0410900 - - - 0 - - O.I. H.G.
L Os05g0314100 AK121220.1 - Small nuclear ribonucleoprotein (Sm protein)family protein 6e-46 At2g47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative O.I. H.G.
L Os05g0389300 AK059190.1 - Small nuclear ribonucleoprotein (Sm protein)family protein 2e-6 At5g48870 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) O.I. H.G.
L Os05g0594900 AK121070.1 - U6 snRNA-associated Sm-like protein LSm8 1e+0 At1g65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G.
L Os07g0608700 AK120837.1 - Small nuclear ribonucleoprotein G (snRNP-G) (Smprotein G) (Sm-G) (SmG) 9e-14 At3g11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative O.I. H.G.
L Os08g0154700 CF324539 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative O.I. H.G.
L Os08g0177700 AK121665.1 - U6 snRNA-associated Sm-like protein LSm7 8e-5 At2g03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G.
L Os08g0416400 AK064144.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At1g62240 unknown protein O.I. H.G.
L Os11g0657300 AK062752.1 - Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF) 2e-26 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.
L	Os02g0102700	AK061193.1	-	Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3)	8e-9	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.
L	Os02g0126700	AK063621.1	-	Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE)	2e-11	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	O.I.	H.G.
L	Os02g0510100	AK058487.1	-	The start codon is not identified.	6e-18	At2g43810	small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative	O.I.	H.G.
L	Os02g0586500	AK101525.1	-	Small nuclear ribonucleoprotein Sm D1 (snRNP coreprotein D1) (Sm-D1) (Sm-D autoantigen)	7e-12	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.
L	Os02g0827300	AK069159.1	-	Protein of unknown function DUF382 domaincontaining protein	7e-36	At4g21660	proline-rich spliceosome-associated (PSP) family protein	O.I.	H.G.
L	Os03g0410900	-	-	-	0	-	-	O.I.	H.G.
L	Os05g0314100	AK121220.1	-	Small nuclear ribonucleoprotein (Sm protein)family protein	6e-46	At2g47640	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	O.I.	H.G.
L	Os05g0389300	AK059190.1	-	Small nuclear ribonucleoprotein (Sm protein)family protein	2e-6	At5g48870	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	O.I.	H.G.
L	Os05g0594900	AK121070.1	-	U6 snRNA-associated Sm-like protein LSm8	1e+0	At1g65700	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.
L	Os07g0608700	AK120837.1	-	Small nuclear ribonucleoprotein G (snRNP-G) (Smprotein G) (Sm-G) (SmG)	9e-14	At3g11500	small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative	O.I.	H.G.
L	Os08g0154700	CF324539	-	Small nuclear ribonucleoprotein (Sm protein)family protein	9e-24	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	O.I.	H.G.
L	Os08g0177700	AK121665.1	-	U6 snRNA-associated Sm-like protein LSm7	8e-5	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.
L	Os08g0416400	AK064144.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At1g62240	unknown protein	O.I.	H.G.
L	Os11g0657300	AK062752.1	-	Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF)	2e-26	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0006396 37 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016071 2 The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.

Process ID	Gene number	Process name
GO:0006396	37	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0016071	2	The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.

The lower GO terms

Process ID Gene number Process name
GO:0000398 2 The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0006370 1 Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
GO:0006379 0 Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
GO:0010239 0 Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs.
GO:0030969 0 The spliceosome-independent cleavage and ligation of the mRNA encoding a UFP-specific transcription factor to remove a single intron, thereby increasing both the translational efficiency of the processed mRNA and the activity of the protein it encodes.
GO:0031124 1 Any process involved in forming the mature 3' end of an mRNA molecule.
GO:0031426 0 The conversion of a primary mRNA transcript containing more than one complete protein-coding region into individual mature mRNA molecules.

Process ID	Gene number	Process name
GO:0000398	2	The joining together of exons from one or more primary transcripts of nuclear messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO:0006370	1	Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
GO:0006379	0	Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
GO:0010239	0	Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs.
GO:0030969	0	The spliceosome-independent cleavage and ligation of the mRNA encoding a UFP-specific transcription factor to remove a single intron, thereby increasing both the translational efficiency of the processed mRNA and the activity of the protein it encodes.
GO:0031124	1	Any process involved in forming the mature 3' end of an mRNA molecule.
GO:0031426	0	The conversion of a primary mRNA transcript containing more than one complete protein-coding region into individual mature mRNA molecules.

Comparison with co-expressed genes

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Query process ID	GO:0006397
Process name	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Organism	Oryza sativa

Biological process to genes

Query process ID GO:0006397 Process name Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. Organism Oryza sativa

The upper GO terms

The lower GO terms

Comparison with co-expressed genes

Query process ID GO:0006397

Process name Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

Organism Oryza sativa