CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0006396

Process name Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. H.G. Other DB
L Os01g0193600 AK068784.1 - Deoxyribonuclease/rho motif-related TRAM domaincontaining protein 1e-15 At3g21300 RNA methyltransferase family protein O.I. H.G.
L Os01g0551100 - - - 0 - - O.I. H.G.
L Os01g0742000 BI306081 - The start codon is not identified. 3e-4 At2g19870 tRNA/rRNA methyltransferase (SpoU) family protein O.I. H.G.
L Os01g0756400 AK105125.1 - Hypothetical protein 5e-8 At5g46250 RNA recognition motif (RRM)-containing protein O.I. H.G.
L Os01g0810100 AK071916.1 - Ribonuclease III domain containing protein 3e-22 At4g37510 ribonuclease III family protein O.I. H.G.
L Os02g0103900 AK070601.1 - Protein prenyltransferase domain containingprotein 1e-3 At4g28200 - O.I. H.G.
L Os02g0245000 AK119874.1 - SWAP/Surp domain containing protein 4e-13 At1g14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein O.I. H.G.
L Os02g0610400 - - - 0 - - O.I. H.G.
L Os02g0617700 AK058997.1 - RNA binding S1 domain containing protein 4e-2 At1g21280 unknown protein O.I. H.G.
L Os02g0772500 AK100349.1 - Protein prenyltransferase domain containingprotein 4e-5 At3g17740 unknown protein O.I. H.G.
L Os03g0370500 AK063289.1 - - 4e-34 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) O.I. H.G.
L Os03g0685100 AK059852.1 - contains InterPro domain(s): IPR001537 2e+0 At5g23510 unknown protein O.I. H.G.
L Os03g0809900 AK103277.1 - Tsunagi 1e-1 At3g60270 uclacyanin, putative O.I. H.G.
L Os03g0854200 AK069107.1 - 3' exoribonuclease domain containing protein 1e-8 At3g46210 3' exoribonuclease family domain 1-containing protein O.I. H.G.
L Os03g0854400 - - - 0 - - O.I. H.G.
L Os04g0395900 - - - 0 - - O.I. H.G.
L Os04g0683500 AK071538.1 - Adenosine deaminase acting on tRNA 1 3e+0 At5g63870 PP7 (SERINE/THREONINE PHOSPHATASE 7) O.I. H.G.
L Os05g0108000 AK065542.1 - The start codon is not identified. 4e-31 At5g14460 pseudouridine synthase/ transporter O.I. H.G.
L Os05g0140500 - - - 0 - - O.I. H.G.
L Os05g0141400 AK071339.1 - contains InterPro domain(s): IPR001537 4e-14 At4g15520 tRNA/rRNA methyltransferase (SpoU) family protein O.I. H.G.
L Os05g0289400 AK100478.1 - Cell cycle control protein cwf4 7e-24 At5g41770 crooked neck protein, putative / cell cycle protein, putative O.I. H.G.
L Os05g0318300 AK065362.1 - Uncharacterised conserved protein UCP005520 familyprotein 7e-4 At2g25460 - O.I. H.G.
L Os05g0447700 AK071331.1 - Ferritin/ribonucleotide reductase-like familyprotein 2e-5 At1g07280 binding O.I. H.G.
L Os06g0235800 - - - 0 - - O.I. H.G.
L Os06g0358800 AK107404.1 - Ribonuclease III domain containing protein 3e+0 At1g49930 - O.I. H.G.
L Os06g0489200 AK103574.1 - SWAP/Surp domain containing protein 9e-15 At5g23080 TGH (TOUGH) O.I. H.G.
L Os06g0717400 AK072887.1 - Pseudouridine synthase, Rlu family protein 2e-17 At1g76050 pseudouridine synthase family protein O.I. H.G.
L Os07g0203300 AK103882.1 - RNA binding S1 domain containing protein 6e-12 At3g11964 RNA binding O.I. H.G.
L Os07g0598100 AK068136.1 - Hydroxyproline-rich glycoprotein DZ-HRGP precursor 4e-3 At2g19000 - O.I. H.G.
L Os07g0636000 AK102460.1 - Cbf5p 4e-22 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) O.I. H.G.
L Os08g0113200 AK102710.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-1 At5g15790 zinc finger (C3HC4-type RING finger) family protein O.I. H.G.
L Os08g0323600 AK067514.1 - Glycoside hydrolase, starch-binding domaincontaining protein 5e-7 At2g04270 RNEE/G (RNASE E/G-LIKE) O.I. H.G.
L Os08g0379000 AK105647.1 - Protein prenyltransferase domain containingprotein 4e-2 At2g21970 SEP2 (STRESS ENHANCED PROTEIN 2) O.I. H.G.
L Os08g0542900 AK074001.1 - Lupus La protein family protein 2e-1 At2g43970 La domain-containing protein O.I. H.G.
L Os09g0103500 AK065573.1 - Pseudouridine synthase domain containing protein 8e-1 At2g10920 unknown protein O.I. H.G.
L Os10g0328700 AK070180.1 - TPR-like domain containing protein 2e-2 At5g44450 methyltransferase O.I. H.G.
L Os10g0498600 AK071378.1 - RNA-processing protein, HAT helix repeatcontaining protein 2e-31 At4g03430 EMB2770 (EMBRYO DEFECTIVE 2770) O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.
L	Os01g0193600	AK068784.1	-	Deoxyribonuclease/rho motif-related TRAM domaincontaining protein	1e-15	At3g21300	RNA methyltransferase family protein	O.I.	H.G.
L	Os01g0551100	-	-	-	0	-	-	O.I.	H.G.
L	Os01g0742000	BI306081	-	The start codon is not identified.	3e-4	At2g19870	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.
L	Os01g0756400	AK105125.1	-	Hypothetical protein	5e-8	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.
L	Os01g0810100	AK071916.1	-	Ribonuclease III domain containing protein	3e-22	At4g37510	ribonuclease III family protein	O.I.	H.G.
L	Os02g0103900	AK070601.1	-	Protein prenyltransferase domain containingprotein	1e-3	At4g28200	-	O.I.	H.G.
L	Os02g0245000	AK119874.1	-	SWAP/Surp domain containing protein	4e-13	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	O.I.	H.G.
L	Os02g0610400	-	-	-	0	-	-	O.I.	H.G.
L	Os02g0617700	AK058997.1	-	RNA binding S1 domain containing protein	4e-2	At1g21280	unknown protein	O.I.	H.G.
L	Os02g0772500	AK100349.1	-	Protein prenyltransferase domain containingprotein	4e-5	At3g17740	unknown protein	O.I.	H.G.
L	Os03g0370500	AK063289.1	-	-	4e-34	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	H.G.
L	Os03g0685100	AK059852.1	-	contains InterPro domain(s): IPR001537	2e+0	At5g23510	unknown protein	O.I.	H.G.
L	Os03g0809900	AK103277.1	-	Tsunagi	1e-1	At3g60270	uclacyanin, putative	O.I.	H.G.
L	Os03g0854200	AK069107.1	-	3' exoribonuclease domain containing protein	1e-8	At3g46210	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.
L	Os03g0854400	-	-	-	0	-	-	O.I.	H.G.
L	Os04g0395900	-	-	-	0	-	-	O.I.	H.G.
L	Os04g0683500	AK071538.1	-	Adenosine deaminase acting on tRNA 1	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.
L	Os05g0108000	AK065542.1	-	The start codon is not identified.	4e-31	At5g14460	pseudouridine synthase/ transporter	O.I.	H.G.
L	Os05g0140500	-	-	-	0	-	-	O.I.	H.G.
L	Os05g0141400	AK071339.1	-	contains InterPro domain(s): IPR001537	4e-14	At4g15520	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.
L	Os05g0289400	AK100478.1	-	Cell cycle control protein cwf4	7e-24	At5g41770	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.
L	Os05g0318300	AK065362.1	-	Uncharacterised conserved protein UCP005520 familyprotein	7e-4	At2g25460	-	O.I.	H.G.
L	Os05g0447700	AK071331.1	-	Ferritin/ribonucleotide reductase-like familyprotein	2e-5	At1g07280	binding	O.I.	H.G.
L	Os06g0235800	-	-	-	0	-	-	O.I.	H.G.
L	Os06g0358800	AK107404.1	-	Ribonuclease III domain containing protein	3e+0	At1g49930	-	O.I.	H.G.
L	Os06g0489200	AK103574.1	-	SWAP/Surp domain containing protein	9e-15	At5g23080	TGH (TOUGH)	O.I.	H.G.
L	Os06g0717400	AK072887.1	-	Pseudouridine synthase, Rlu family protein	2e-17	At1g76050	pseudouridine synthase family protein	O.I.	H.G.
L	Os07g0203300	AK103882.1	-	RNA binding S1 domain containing protein	6e-12	At3g11964	RNA binding	O.I.	H.G.
L	Os07g0598100	AK068136.1	-	Hydroxyproline-rich glycoprotein DZ-HRGP precursor	4e-3	At2g19000	-	O.I.	H.G.
L	Os07g0636000	AK102460.1	-	Cbf5p	4e-22	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	H.G.
L	Os08g0113200	AK102710.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	4e-1	At5g15790	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.
L	Os08g0323600	AK067514.1	-	Glycoside hydrolase, starch-binding domaincontaining protein	5e-7	At2g04270	RNEE/G (RNASE E/G-LIKE)	O.I.	H.G.
L	Os08g0379000	AK105647.1	-	Protein prenyltransferase domain containingprotein	4e-2	At2g21970	SEP2 (STRESS ENHANCED PROTEIN 2)	O.I.	H.G.
L	Os08g0542900	AK074001.1	-	Lupus La protein family protein	2e-1	At2g43970	La domain-containing protein	O.I.	H.G.
L	Os09g0103500	AK065573.1	-	Pseudouridine synthase domain containing protein	8e-1	At2g10920	unknown protein	O.I.	H.G.
L	Os10g0328700	AK070180.1	-	TPR-like domain containing protein	2e-2	At5g44450	methyltransferase	O.I.	H.G.
L	Os10g0498600	AK071378.1	-	RNA-processing protein, HAT helix repeatcontaining protein	2e-31	At4g03430	EMB2770 (EMBRYO DEFECTIVE 2770)	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0010467 0 The process by which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GO:0016070 0 The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

Process ID	Gene number	Process name
GO:0010467	0	The process by which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GO:0016070	0	The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

The lower GO terms

Process ID Gene number Process name
GO:0000379 0 The process by which the tertiary structure of a tRNA type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs.
GO:0000963 0 The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules; occurs in the mitochondrion.
GO:0000966 0 Any process involved in forming the mature 5' end of an RNA molecule.
GO:0006397 14 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO:0008380 17 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
GO:0009452 0 The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent RNA polymerase II transcript.
GO:0031050 0 Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function.
GO:0031123 0 Any process involved in forming the mature 3' end of an RNA molecule.
GO:0031425 0 The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules.
GO:0033168 0 The process by which double-stranded siRNA molecules are converted to single-stranded siRNAs; required for the formation of a mature RITS complex during RNA interference.
GO:0034470 0 Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules.
GO:0070055 0 The process by which the tertiary structure of a HAC1 type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs.

Process ID	Gene number	Process name
GO:0000379	0	The process by which the tertiary structure of a tRNA type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs.
GO:0000963	0	The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules; occurs in the mitochondrion.
GO:0000966	0	Any process involved in forming the mature 5' end of an RNA molecule.
GO:0006397	14	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO:0008380	17	The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
GO:0009452	0	The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent RNA polymerase II transcript.
GO:0031050	0	Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function.
GO:0031123	0	Any process involved in forming the mature 3' end of an RNA molecule.
GO:0031425	0	The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules.
GO:0033168	0	The process by which double-stranded siRNA molecules are converted to single-stranded siRNAs; required for the formation of a mature RITS complex during RNA interference.
GO:0034470	0	Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules.
GO:0070055	0	The process by which the tertiary structure of a HAC1 type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs.

Comparison with co-expressed genes

Back to the CoP portal site

Back to the KAGIANA project homepage

Query process ID	GO:0006396
Process name	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Organism	Oryza sativa

Biological process to genes

Query process ID GO:0006396 Process name Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. Organism Oryza sativa

The upper GO terms

The lower GO terms

Comparison with co-expressed genes

Query process ID GO:0006396

Process name Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Organism Oryza sativa