Biological process to genes

Query process ID GO:0006352
Process name Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt1g55520841999TBP2 (TATA BINDING PROTEIN 2)TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.O.I.H.G.
SAt1g08540837376SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.O.I.H.G.
SAt1g64860842794SIGA (SIGMA FACTOR A)Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzymeO.I.H.G.
SAt2g36990818273SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons.O.I.H.G.
SAt3g53920824559SIGC (RNA POLYMERASE SIGMA-SUBUNIT C)Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.O.I.H.G.
SAt3g57290824896EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.O.I.H.G.
SAt5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.H.G.
SAt5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.O.I.H.G.
CAt1g02680837962TAF13 (TBP-ASSOCIATED FACTOR 13)F:RNA polymerase II transcription factor activity, DNA binding;P:transcription initiation, transcription from RNA polymerase II promoter;C:transcription factor complex;FMPOVO.I.H.G.
CAt1g04950839370TAF6 (TBP-ASSOCIATED FACTOR 6)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.O.I.H.G.
CAt1g17440838316EER4 (ENHANCED ETHYLENE RESPONSE 4)Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.O.I.H.G.
CAt1g54140841854TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)putative TATA binding protein associated factor 21kDaO.I.H.G.
CAt1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.H.G.
CAt4g31720829300TAFII15 (TBP-ASSOCIATED FACTOR II 15)Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)O.I.H.G.
LAt1g27720839665TAF4B (TBP-ASSOCIATED FACTOR 4B)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFPBVO.I.H.G.
LAt1g304556240845protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion bindingF:protein binding, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;MFOPO.I.H.G.
LAt1g54360841877TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.O.I.H.G.
LAt2g16485816147DNA binding / nucleic acid binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOFBPAVO.I.H.G.
LAt2g41630818761TFIIB (TRANSCRIPTION FACTOR II B)Encodes the transcription factor TFIIB.O.I.H.G.
LAt2g45100819117RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion bindingF:in 6 functions;P:translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;OMAFPVBO.I.H.G.
LAt3g09360820092RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion bindingF:in 6 functions;P:translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;MOFBPAVO.I.H.G.
LAt3g10070820168TAF12 (TBP-ASSOCIATED FACTOR 12)Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.O.I.H.G.
LAt3g10330820195transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription;C:nucleus, cytoplasm;OAMFPVO.I.H.G.
LAt3g51120824276DNA binding / nucleic acid binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOPBFVO.I.H.G.
LAt3g57370824904transcription factor IIB (TFIIB) family proteinF:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;AOMFPVO.I.H.G.
LAt4g10680826661transcription factor IIB (TFIIB) family proteinF:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription;C:transcription factor complex, nucleus;AOMFPVO.I.H.G.
LAt4g19550827697transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex;OMPFBVO.I.H.G.
LAt4g35540829706transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation;C:transcription factor complex;AFOMPO.I.H.G.
LAt4g36650829817ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.O.I.H.G.
LAt5g08430830742SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing proteinF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PMOFO.I.H.G.
LAt5g23480832414DNA bindingF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PO.I.H.G.
LAt5g39230833919transcription initiation factor-relatedF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation;C:transcription factor complex;PO.I.H.G.
LAt5g43130834330TAF4 (TBP-ASSOCIATED FACTOR 4)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVAO.I.H.G.
LAt5g63700836490zinc finger (C3HC4 type RING finger) family proteinF:protein binding, DNA binding, zinc ion binding;P:histone modification, transcription initiation;C:nucleus;MOPFBVO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00063516The synthesis of RNA on a template of DNA.
GO:000646112The aggregation, arrangement and bonding together of a set of components to form a protein complex.



The lower GO terms

Process ID Gene number Process name
GO:00063610A transcription initiation process that results in RNA synthesis by RNA polymerase I.
GO:000636716A transcription initiation process that results in RNA synthesis by RNA polymerase II.
GO:00063840A transcription initiation process that results in RNA synthesis by RNA polymerase III.
GO:00063910A transcription initiation process that takes place at a promoter on the mitochondrial chromosome, and results in RNA synthesis by a mitochondrial RNA polymerase.
GO:00708970The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription.





Comparison with co-expressed genes



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