CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0006096

Process name The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. H.G. Other DB
X Os03g0776000 D45217.1 - Glucose-6-phosphate isomerase, cytosolic A (EC5.3.1.9) (GPI-A) (Phosphoglucose isomerase A) (PGI-A)(Phosphohexose isomerase A) (PHI- A) 3e-44 At5g42740 glucose-6-phosphate isomerase, cytosolic (PGIC) O.I. H.G.
X Os06g0256500 D45218.1 - Glucose-6-phosphate isomerase, cytosolic B (EC5.3.1.9) (GPI-B) (Phosphoglucose isomerase B) (PGI-B)(Phosphohexose isomerase B) (PHI- B) 7e-42 At5g42740 glucose-6-phosphate isomerase, cytosolic (PGIC) O.I. H.G.
C Os01g0118000 AK099387.1 - - 1e-54 At2g01140 fructose-bisphosphate aldolase, putative O.I. H.G.
C Os01g0905800 AK073770.1 - Aldolase C-1 6e-20 At3g52930 fructose-bisphosphate aldolase, putative O.I. H.G.
C Os02g0105400 D13817.1 - - 8e-1 At4g17260 L-lactate dehydrogenase, putative O.I. H.G.
C Os03g0129300 CB644543 - Glyceraldehyde-3-phosphate dehydrogenase (EC1.2.1.13) (Fragment) 2e-29 At1g42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) O.I. H.G.
C Os04g0459500 AK071685.1 - GADPH (383 AA) (Fragment) 6e-11 At1g12900 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) O.I. H.G.
C Os06g0104900 AK106504.1 - L-lactate dehydrogenase B (EC 1.1.1.27) (LDH-B)(Fragment) 3e+0 At4g17260 L-lactate dehydrogenase, putative O.I. H.G.
C Os10g0104300 - - - 0 - - O.I. H.G.
C Os10g0203000 AK100514.1 - Endonuclease/exonuclease/phosphatase familyprotein 2e-5 At5g54130 - O.I. H.G.
C Os11g0171300 CB662296 - Fructose-bisphosphate aldolase, chloroplastprecursor (EC 4.1.2.13) (ALDP) 5e-33 At4g38970 fructose-bisphosphate aldolase, putative O.I. H.G.
L Os01g0191700 AK121093.1 - Pyrophosphate-fructose-6-phosphate1-phosphotransferase-like protein(Pyrophosphate-dependent phosphofructo-1-kinase-likeprotein) 2e-14 At5g56630 PFK7 (PHOSPHOFRUCTOKINASE 7) O.I. H.G.
L Os01g0738800 - - - 0 - - O.I. H.G.
L Os02g0105200 AK063525.1 - Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) 3e-19 At3g13930 dihydrolipoamide S-acetyltransferase, putative O.I. H.G.
L Os02g0169300 AK070041.1 - Phosphoglycerate kinase, cytosolic (EC 2.7.2.3) 5e-67 At1g79550 PGK (PHOSPHOGLYCERATE KINASE) O.I. H.G.
L Os02g0171100 AK070032.1 - NAD-dependent glyceraldehyde-3-phosphatedehydrogenase (EC 1.2.1.12) (Fragment) 6e-48 At1g16300 GAPCP-2 O.I. H.G.
L Os02g0323700 - - - 0 - - O.I. H.G.
L Os02g0601300 AK099086.1 - - 1e-166 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G.
L Os02g0714200 AK070279.1 - Pyrophosphate--fructose 6-phosphate1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP)(6-phosphofructokinase, pyrophosphate dependent)(Pyrophosphate-dependent 6-phosphofructose-1-kinase)(PPi-PFK) 2e-48 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative O.I. H.G.
L Os02g0751800 AK101802.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 3e-34 At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G.
L Os03g0266200 AK058348.1 - Enolase 2 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 2) (2-phospho- D-glycerate hydro-lyase 2)(Allergen Hev b 9) 2e-1 At3g52090 NRPB11 O.I. H.G.
L Os03g0672300 - - - 0 - - O.I. H.G.
L Os04g0469500 AK071065.1 - Phosphofructokinase family protein 3e-28 At5g47810 PFK2 (PHOSPHOFRUCTOKINASE 2) O.I. H.G.
L Os04g0486600 BI797548 - Glyceraldehyde-3-phosphate dehydrogenase,cytosolic 3 (EC 1.2.1.12) 2e+0 At1g09220 pentatricopeptide (PPR) repeat-containing protein O.I. H.G.
L Os04g0677300 AK108084.1 - Harpin-induced 1 domain containing protein 1e-1 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G.
L Os04g0677500 D21297.1 - Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK) 1e-4 At3g04050 pyruvate kinase, putative O.I. H.G.
L Os05g0194900 AK071798.1 - Pyrophosphate-fructose-6-phosphate1-phosphotransferase-like protein(Pyrophosphate-dependent phosphofructo-1-kinase-likeprotein) 2e-13 At4g26270 PFK3 (PHOSPHOFRUCTOKINASE 3) O.I. H.G.
L Os06g0105400 AK071985.1 - Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) 1e-27 At3g13930 dihydrolipoamide S-acetyltransferase, putative O.I. H.G.
L Os06g0136600 AK069316.1 - Enolase 1 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 1) (2-phospho- D-glycerate hydro-lyase 1) 9e-47 At2g36530 LOS2 O.I. H.G.
L Os06g0151900 AK058759.1 - Hypothetical protein 1e-4 At5g56630 PFK7 (PHOSPHOFRUCTOKINASE 7) O.I. H.G.
L Os06g0326400 CB667878 - Phosphofructokinase family protein 6e-49 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative O.I. H.G.
L Os06g0608700 AK064989.1 - Fructose-bisphosphate aldolase, class-I familyprotein 1e-36 At4g26530 fructose-bisphosphate aldolase, putative O.I. H.G.
L Os07g0181000 AK066918.1 - Pyruvate kinase isozyme A, chloroplast precursor(EC 2.7.1.40) 8e-23 At3g22960 PKP-ALPHA O.I. H.G.
L Os07g0410100 AK070846.1 - Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) 2e-21 At3g13930 dihydrolipoamide S-acetyltransferase, putative O.I. H.G.
L Os08g0120600 AK104952.1 - Aldolase C-1 8e-10 At3g52930 fructose-bisphosphate aldolase, putative O.I. H.G.
L Os08g0345700 AK099939.1 - Pyrophosphate--fructose 6-phosphate1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP)(6-phosphofructokinase, pyrophosphate-dependent)(Pyrophosphate-dependent 6-phosphofructose-1-kinase)(PPi-PFK) 6e-6 At1g20950 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related O.I. H.G.
L Os08g0478800 AK107494.1 - Phosphoglucose isomerase (PGI) family protein 7e-39 At4g24620 PGI1 (PHOSPHOGLUCOSE ISOMERASE 1) O.I. H.G.
L Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) O.I. H.G.
L Os09g0465600 AB107218.1 - Glucose-6-phosphate isomerase precursor (EC5.3.1.9) 2e-36 At4g24620 PGI1 (PHOSPHOGLUCOSE ISOMERASE 1) O.I. H.G.
L Os10g0571200 AK103375.1 - Pyruvate kinase isozyme G, chloroplast (EC2.7.1.40) (Fragment) 9e-21 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.
X	Os03g0776000	D45217.1	-	Glucose-6-phosphate isomerase, cytosolic A (EC5.3.1.9) (GPI-A) (Phosphoglucose isomerase A) (PGI-A)(Phosphohexose isomerase A) (PHI- A)	3e-44	At5g42740	glucose-6-phosphate isomerase, cytosolic (PGIC)	O.I.	H.G.
X	Os06g0256500	D45218.1	-	Glucose-6-phosphate isomerase, cytosolic B (EC5.3.1.9) (GPI-B) (Phosphoglucose isomerase B) (PGI-B)(Phosphohexose isomerase B) (PHI- B)	7e-42	At5g42740	glucose-6-phosphate isomerase, cytosolic (PGIC)	O.I.	H.G.
C	Os01g0118000	AK099387.1	-	-	1e-54	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.
C	Os01g0905800	AK073770.1	-	Aldolase C-1	6e-20	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.
C	Os02g0105400	D13817.1	-	-	8e-1	At4g17260	L-lactate dehydrogenase, putative	O.I.	H.G.
C	Os03g0129300	CB644543	-	Glyceraldehyde-3-phosphate dehydrogenase (EC1.2.1.13) (Fragment)	2e-29	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.
C	Os04g0459500	AK071685.1	-	GADPH (383 AA) (Fragment)	6e-11	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	O.I.	H.G.
C	Os06g0104900	AK106504.1	-	L-lactate dehydrogenase B (EC 1.1.1.27) (LDH-B)(Fragment)	3e+0	At4g17260	L-lactate dehydrogenase, putative	O.I.	H.G.
C	Os10g0104300	-	-	-	0	-	-	O.I.	H.G.
C	Os10g0203000	AK100514.1	-	Endonuclease/exonuclease/phosphatase familyprotein	2e-5	At5g54130	-	O.I.	H.G.
C	Os11g0171300	CB662296	-	Fructose-bisphosphate aldolase, chloroplastprecursor (EC 4.1.2.13) (ALDP)	5e-33	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.
L	Os01g0191700	AK121093.1	-	Pyrophosphate-fructose-6-phosphate1-phosphotransferase-like protein(Pyrophosphate-dependent phosphofructo-1-kinase-likeprotein)	2e-14	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	O.I.	H.G.
L	Os01g0738800	-	-	-	0	-	-	O.I.	H.G.
L	Os02g0105200	AK063525.1	-	Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12)	3e-19	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.
L	Os02g0169300	AK070041.1	-	Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)	5e-67	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.
L	Os02g0171100	AK070032.1	-	NAD-dependent glyceraldehyde-3-phosphatedehydrogenase (EC 1.2.1.12) (Fragment)	6e-48	At1g16300	GAPCP-2	O.I.	H.G.
L	Os02g0323700	-	-	-	0	-	-	O.I.	H.G.
L	Os02g0601300	AK099086.1	-	-	1e-166	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.
L	Os02g0714200	AK070279.1	-	Pyrophosphate--fructose 6-phosphate1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP)(6-phosphofructokinase, pyrophosphate dependent)(Pyrophosphate-dependent 6-phosphofructose-1-kinase)(PPi-PFK)	2e-48	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.
L	Os02g0751800	AK101802.1	-	Phosphoglycerate/bisphosphoglycerate mutase familyprotein	3e-34	At1g22170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.
L	Os03g0266200	AK058348.1	-	Enolase 2 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 2) (2-phospho- D-glycerate hydro-lyase 2)(Allergen Hev b 9)	2e-1	At3g52090	NRPB11	O.I.	H.G.
L	Os03g0672300	-	-	-	0	-	-	O.I.	H.G.
L	Os04g0469500	AK071065.1	-	Phosphofructokinase family protein	3e-28	At5g47810	PFK2 (PHOSPHOFRUCTOKINASE 2)	O.I.	H.G.
L	Os04g0486600	BI797548	-	Glyceraldehyde-3-phosphate dehydrogenase,cytosolic 3 (EC 1.2.1.12)	2e+0	At1g09220	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.
L	Os04g0677300	AK108084.1	-	Harpin-induced 1 domain containing protein	1e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.
L	Os04g0677500	D21297.1	-	Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK)	1e-4	At3g04050	pyruvate kinase, putative	O.I.	H.G.
L	Os05g0194900	AK071798.1	-	Pyrophosphate-fructose-6-phosphate1-phosphotransferase-like protein(Pyrophosphate-dependent phosphofructo-1-kinase-likeprotein)	2e-13	At4g26270	PFK3 (PHOSPHOFRUCTOKINASE 3)	O.I.	H.G.
L	Os06g0105400	AK071985.1	-	Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12)	1e-27	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.
L	Os06g0136600	AK069316.1	-	Enolase 1 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 1) (2-phospho- D-glycerate hydro-lyase 1)	9e-47	At2g36530	LOS2	O.I.	H.G.
L	Os06g0151900	AK058759.1	-	Hypothetical protein	1e-4	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	O.I.	H.G.
L	Os06g0326400	CB667878	-	Phosphofructokinase family protein	6e-49	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.
L	Os06g0608700	AK064989.1	-	Fructose-bisphosphate aldolase, class-I familyprotein	1e-36	At4g26530	fructose-bisphosphate aldolase, putative	O.I.	H.G.
L	Os07g0181000	AK066918.1	-	Pyruvate kinase isozyme A, chloroplast precursor(EC 2.7.1.40)	8e-23	At3g22960	PKP-ALPHA	O.I.	H.G.
L	Os07g0410100	AK070846.1	-	Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12)	2e-21	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.
L	Os08g0120600	AK104952.1	-	Aldolase C-1	8e-10	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.
L	Os08g0345700	AK099939.1	-	Pyrophosphate--fructose 6-phosphate1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP)(6-phosphofructokinase, pyrophosphate-dependent)(Pyrophosphate-dependent 6-phosphofructose-1-kinase)(PPi-PFK)	6e-6	At1g20950	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	O.I.	H.G.
L	Os08g0478800	AK107494.1	-	Phosphoglucose isomerase (PGI) family protein	7e-39	At4g24620	PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)	O.I.	H.G.
L	Os09g0415800	AK071371.1	-	Phosphofructokinase family protein	5e-18	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	O.I.	H.G.
L	Os09g0465600	AB107218.1	-	Glucose-6-phosphate isomerase precursor (EC5.3.1.9)	2e-36	At4g24620	PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)	O.I.	H.G.
L	Os10g0571200	AK103375.1	-	Pyruvate kinase isozyme G, chloroplast (EC2.7.1.40) (Fragment)	9e-21	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0006007 1 The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose.
GO:0006091 1 The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
GO:0044275 0 The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.

Process ID	Gene number	Process name
GO:0006007	1	The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose.
GO:0006091	1	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
GO:0044275	0	The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.

The lower GO terms

Process ID Gene number Process name
GO:0019641 0 The main pathway for anaerobic degradation of carbohydrates. Starch or glycogen is hydrolyzed to glucose 1-phosphate and then through a series of intermediates, yielding two ATP molecules per glucose and producing either pyruvate (which feeds into the tricarboxylic acid cycle) or lactate.
GO:0019642 0

Process ID	Gene number	Process name
GO:0019641	0	The main pathway for anaerobic degradation of carbohydrates. Starch or glycogen is hydrolyzed to glucose 1-phosphate and then through a series of intermediates, yielding two ATP molecules per glucose and producing either pyruvate (which feeds into the tricarboxylic acid cycle) or lactate.
GO:0019642	0

Comparison with co-expressed genes

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Query process ID	GO:0006096
Process name	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
Organism	Oryza sativa