CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0048598

Process name The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
X At3g04460 819602 PEX12 RING finger protein involved in peroxisome biogenesis. O.I. H.G.
X At3g46740 823827 TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III) Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts. O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	O.I.	H.G.	Other DB
X	At3g04460	819602	PEX12	RING finger protein involved in peroxisome biogenesis.	O.I.	H.G.
X	At3g46740	823827	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0009653 4 The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
GO:0009790 46 The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.

Process ID	Gene number	Process name
GO:0009653	4	The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
GO:0009790	46	The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.

The lower GO terms

Process ID Gene number Process name
GO:0001743 0 The initial developmental process that will lead to the formation of an eye.
GO:0007369 0 A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
GO:0007377 0 Elongation of the germ band on the ventral side of the embryo, accompanied by a halving in width. The elongation process pushes the posterior midgut invagination closed and compresses the amnioserosa further.
GO:0007390 0 The spreading of the amnioserosa from its compressed state to cover the whole of the dorsal surface. Initiating in the thorax and spreading posteriorly, it is accompanied by the transition from a parasegmental to segmental division of the embryo.
GO:0007392 0 Events that occur at the start of dorsal closure.
GO:0008258 0 Movement of the anterior ectoderm to the interior of the embryo.
GO:0010064 1 The process by which the anatomical structures of embryonic shoot are generated and organized. Morphogenesis pertains to the creation of form.
GO:0010086 1 The process by which the anatomical structures of the embryonic root are generated and organized. Morphogenesis pertains to the creation of form.
GO:0010172 0 The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form.
GO:0016331 0 The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form.
GO:0030910 0 The formation of a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.
GO:0033505 0 The process by which the anatomical structure of the floor plate is generated and organized. Morphogenesis pertains to the creation of form.
GO:0035113 0 The process, occurring in the embryo, by which the anatomical structures of the appendage are generated and organized. Morphogenesis pertains to the creation of form. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
GO:0035122 0 The process, occurring in the embryo, by which the anatomical structures of the medial fin are generated and organized. Morphogenesis pertains to the creation of form. Medial fins are unpaired fins of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming.
GO:0042471 0 The process by which the anatomical structures of the ear are generated and organized. Morphogenesis pertains to the creation of form. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals.
GO:0042733 0 The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe.
GO:0048314 2 The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.
GO:0048558 0 The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus.
GO:0048562 0 Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
GO:0048611 0 The process, occurring during the embryonic phase, whose specific outcome is the progression of the ectodermal gut over time, from its formation to the mature structure.
GO:0048613 0 The process, occurring during the embryonic phase, by which the anatomical structures of the ectodermal gut are generated and organized. Morphogenesis pertains to the creation of form.
GO:0048615 0 The process by which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048617 0 The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048619 0 The process by which the anatomical structures of the hindgut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048702 0 The process by which the anatomical structures of neurocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The neurocranium is the portion of the vertebrate skull surrounding the brain.
GO:0048703 0 The process by which the anatomical structures of viscerocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The viscerocranium is the part of the skull comprising the facial bones.
GO:0048704 0 The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048826 1 The process by which the anatomical structures of the cotyledon are generated and organized. Morphogenesis pertains to the creation of form. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
GO:0060059 0 The process by which the anatomical structure of the retina is generated and organized in a camera-type eye during the embryonic life stage . Morphogenesis pertains to the creation of form.
GO:0060669 0 The process by which the embryonic placenta is generated and organized. Morphogenesis pertains to the creation of form.

Process ID	Gene number	Process name
GO:0001743	0	The initial developmental process that will lead to the formation of an eye.
GO:0007369	0	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
GO:0007377	0	Elongation of the germ band on the ventral side of the embryo, accompanied by a halving in width. The elongation process pushes the posterior midgut invagination closed and compresses the amnioserosa further.
GO:0007390	0	The spreading of the amnioserosa from its compressed state to cover the whole of the dorsal surface. Initiating in the thorax and spreading posteriorly, it is accompanied by the transition from a parasegmental to segmental division of the embryo.
GO:0007392	0	Events that occur at the start of dorsal closure.
GO:0008258	0	Movement of the anterior ectoderm to the interior of the embryo.
GO:0010064	1	The process by which the anatomical structures of embryonic shoot are generated and organized. Morphogenesis pertains to the creation of form.
GO:0010086	1	The process by which the anatomical structures of the embryonic root are generated and organized. Morphogenesis pertains to the creation of form.
GO:0010172	0	The process by which the anatomical structures of the embryonic soma are generated and organized. Morphogenesis pertains to the creation of form.
GO:0016331	0	The process by which the anatomical structures of embryonic epithelia are generated and organized. Morphogenesis pertains to the creation of form.
GO:0030910	0	The formation of a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.
GO:0033505	0	The process by which the anatomical structure of the floor plate is generated and organized. Morphogenesis pertains to the creation of form.
GO:0035113	0	The process, occurring in the embryo, by which the anatomical structures of the appendage are generated and organized. Morphogenesis pertains to the creation of form. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
GO:0035122	0	The process, occurring in the embryo, by which the anatomical structures of the medial fin are generated and organized. Morphogenesis pertains to the creation of form. Medial fins are unpaired fins of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming.
GO:0042471	0	The process by which the anatomical structures of the ear are generated and organized. Morphogenesis pertains to the creation of form. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals.
GO:0042733	0	The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. Morphogenesis pertains to the creation of form. A digit is one of the terminal divisions of an appendage. For example a finger or toe.
GO:0048314	2	The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.
GO:0048558	0	The process by which the anatomical structures of the gut are generated and organized during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus.
GO:0048562	0	Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
GO:0048611	0	The process, occurring during the embryonic phase, whose specific outcome is the progression of the ectodermal gut over time, from its formation to the mature structure.
GO:0048613	0	The process, occurring during the embryonic phase, by which the anatomical structures of the ectodermal gut are generated and organized. Morphogenesis pertains to the creation of form.
GO:0048615	0	The process by which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048617	0	The process by which the anatomical structures of the foregut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048619	0	The process by which the anatomical structures of the hindgut are generated and organized, during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048702	0	The process by which the anatomical structures of neurocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The neurocranium is the portion of the vertebrate skull surrounding the brain.
GO:0048703	0	The process by which the anatomical structures of viscerocranium are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The viscerocranium is the part of the skull comprising the facial bones.
GO:0048704	0	The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form.
GO:0048826	1	The process by which the anatomical structures of the cotyledon are generated and organized. Morphogenesis pertains to the creation of form. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
GO:0060059	0	The process by which the anatomical structure of the retina is generated and organized in a camera-type eye during the embryonic life stage . Morphogenesis pertains to the creation of form.
GO:0060669	0	The process by which the embryonic placenta is generated and organized. Morphogenesis pertains to the creation of form.

Comparison with co-expressed genes

Back to the CoP portal site

Back to the KAGIANA project homepage

Query process ID	GO:0048598
Process name	The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.
Organism	Arabidopsis thaliana