Biological process to genes

Query process ID	GO:0048314
Process name	The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.
Organism	Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC	Gene ID	Repr. ID	Gene name	Functional description	O.I.	H.G.	Other DB
X	At2g01500	814678	PFS2 (PRETTY FEW SEEDS 2)	PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.	O.I.	H.G.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
X	At4g00020	828230	protein binding / single-stranded DNA binding	Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.	O.I.	H.G.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)

The upper GO terms

Process ID	Gene number	Process name
GO:0009561	18	The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center.
GO:0048598	2	The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.

The lower GO terms

Process ID	Gene number	Process name

Genes co-expressed with At2g01500

At2g01500

NF: 0.72

%ile: 90.1

SF: 0.07

SP: 0.04

SR: 0.50

Gene ID	Repr. ID	Gene Name	Functional Description
At2g01500	814678	PFS2 (PRETTY FEW SEEDS 2)	PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
At2g33160	817877	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA
At2g40440	818638	BTB/POZ domain-containing protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO
At3g28280	822454	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g52430	841674	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF
At1g29730	839851	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA
At4g25510	828655	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At4g02970	828121	AT7SL-1 (Arabidopsis 7SL RNA 1)	Signal recognition particle. Type 4 of RNA polymerase III dependent genes.
At5g44330	834458	male sterility MS5 family protein	F:binding;P:biological_process unknown;C:unknown;POBA
At1g33820	840277	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBP
At5g66370	836769	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF
At2g13640	815849	Golgi GDP mannose transporter (GONST1)	F:unknown;P:transcription;C:nucleus;OMBPFVA
At1g11690	837713	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV
At3g57900	824959	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At4g16050	827290	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA
At1g50800	841502	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMFV
At1g46912	841119	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g14560	831307	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g24410	816977	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO
At3g04990	819659	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV
At2g34800	818045	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g29570	839834	zinc finger protein-related	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA
At3g19070	821441	cell wall protein-related	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA
At1g57906	842163	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g07737	3768151	transposable element gene	F:unknown;P:unknown;C:unknown

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