CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0042891

Process name The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells.

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
S At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	O.I.	H.G.	Other DB
S	At3g55130	824679	ATWBC19 (White-Brown Complex homolog 19)	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0015893 0 The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells.

Process ID	Gene number	Process name
GO:0015893	0	The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells.

The lower GO terms

Process ID Gene number Process name
GO:0015896 0 The directed movement of nalidixic acid into, out of, within or between cells. Nalidixic acid is a synthetic antibiotic that interferes with DNA gyrase and inhibits prokaryotic replication.
GO:0015901 0 The directed movement of cycloheximide into, out of, within or between cells. Cycloheximide is an antibiotic produced by Streptomyces which interferes with protein synthesis in eukaryotes.
GO:0015904 2 The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
GO:0015905 0 The directed movement of bicyclomycin into, out of, within or between cells. Bicyclomycin (or bicozamycin) is an antibacterial drug often used as a livestock feed additive.
GO:0042884 0 The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of, within or between cells.
GO:0042892 0 The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, into, out of, within or between cells.
GO:0042893 0 The directed movement of polymyxin, any of a group of related antibiotics produced by Bacillus polymyxa and active against most Gram-negative bacteria, into, out of, within or between cells.
GO:0042894 0 The directed movement of fosmidomycin, a phosphonic acid derivative with potent activity against Gram-negative organisms, into, out of, within or between cells.

Process ID	Gene number	Process name
GO:0015896	0	The directed movement of nalidixic acid into, out of, within or between cells. Nalidixic acid is a synthetic antibiotic that interferes with DNA gyrase and inhibits prokaryotic replication.
GO:0015901	0	The directed movement of cycloheximide into, out of, within or between cells. Cycloheximide is an antibiotic produced by Streptomyces which interferes with protein synthesis in eukaryotes.
GO:0015904	2	The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
GO:0015905	0	The directed movement of bicyclomycin into, out of, within or between cells. Bicyclomycin (or bicozamycin) is an antibacterial drug often used as a livestock feed additive.
GO:0042884	0	The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of, within or between cells.
GO:0042892	0	The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, into, out of, within or between cells.
GO:0042893	0	The directed movement of polymyxin, any of a group of related antibiotics produced by Bacillus polymyxa and active against most Gram-negative bacteria, into, out of, within or between cells.
GO:0042894	0	The directed movement of fosmidomycin, a phosphonic acid derivative with potent activity against Gram-negative organisms, into, out of, within or between cells.

Genes co-expressed with At3g55130

At3g55130 NF: 0.38 %ile: 52.5 SF: 0.02 SP: 0.01 SR: 1.00

Gene ID Repr. ID Gene Name Functional Description
At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.
At3g58010 824970 unknown protein F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO
At5g13720 831217 - F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPA
At4g25650 828670 ACD1-LIKE (ACD1-LIKE) Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.
At1g21640 838766 NADK2 Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.
At4g29070 829028 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g49940 835057 NFU2 (NIFU-LIKE PROTEIN 2) Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
At1g49970 841420 CLPR1 Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At2g01620 814691 MEE11 (maternal effect embryo arrest 11) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO
At3g26085 822206 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:membrane;BOPA
At2g20725 816602 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA
At5g02790 831798 In2-1 protein, putative F:unknown;P:response to cadmium ion;C:unknown;PBMOFA
At5g52030 835278 TraB protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP
At5g48590 834916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At1g09130 837432 ATP-dependent Clp protease proteolytic subunit, putative F:serine-type endopeptidase activity;P:proteolysis;C:in 6 components;BOPMFV
At1g02475 839236 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP
At1g54520 841894 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOM
At1g04530 839500 binding F:binding;P:unknown;C:unknown;PBOMAF
At2g35490 818114 plastid-lipid associated protein PAP, putative F:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOM
At5g03910 830269 ATATH12 member of ATH subfamily
At1g67840 843110 CSK (CHLOROPLAST SENSOR KINASE) Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
At5g22830 832346 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10) putative Mg(2+) transport protein
At1g10500 837590 ATCPISCA (chloroplast-localized IscA-like protein) Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.
At1g69390 843271 ATMINE1 (Arabidopsis homologue of bacterial MinE 1) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.
At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA
At1g28140 839708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO
At1g32160 840108 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At3g06510 819829 SFR2 (SENSITIVE TO FREEZING 2) Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
At4g14210 827061 PDS3 (PHYTOENE DESATURASE 3) Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.
At5g61670 836289 - Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.
At2g34310 817992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB
At4g37200 829874 HCF164 Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.
At1g21590 838760 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA
At1g48450 841266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At5g33280 833300 chloride channel-like (CLC) protein, putative F:anion channel activity, voltage-gated chloride channel activity;P:chloride transport;C:intracellular, membrane;BMOFPA
At4g35760 829729 - F:unknown;P:unknown;C:chloroplast;OBP
At2g28800 817429 ALB3 (ALBINO 3) member of Chloroplast membrane protein ALBINO3 family
At3g56050 824771 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA
At1g07700 837283 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:chloroplast stroma, chloroplast;MPOFBAV
At1g76730 844007 5-formyltetrahydrofolate cyclo-ligase family protein F:catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;MBAOPF
At1g77930 844128 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV
At5g38990 833891 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA
At4g14910 827149 imidazoleglycerol-phosphate dehydratase, putative F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM
At5g45170 834553 CbbY protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO
At2g42590 818859 GRF9 (GENERAL REGULATORY FACTOR 9) 14-3-3 gene. Binds calcium and displays induced structural changes.
At3g27925 822416 DEGP1 (DegP protease 1) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.
At1g66670 842985 CLPP3 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At1g02560 839433 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At1g35340 840423 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;BOPFM
At4g03520 825653 ATHM2 chloroplast localized thioredoxin, similar to prokaryotic types.
At4g35450 829697 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
At5g03880 831679 electron carrier F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM
At2g44870 819096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB
At1g08490 837370 CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE) Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.
At3g52155 824380 - F:unknown;P:unknown;C:chloroplast;OBP
At5g40060 834003 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknown
At1g68830 843215 STN7 (Stt7 homolog STN7) STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation
At5g08740 830775 NDC1 (NAD(P)H dehydrogenase C1) F:NADH dehydrogenase activity;P:unknown;C:intrinsic to mitochondrial inner membrane, cell wall, chloroplast, plastoglobule;BOFMAP
At1g32070 840099 ATNSI (NUCLEAR SHUTTLE INTERACTING) Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.
At1g02910 839350 LPA1 (LOW PSII ACCUMULATION1) Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.
At1g50170 841439 ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B) encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis
At5g06130 830500 chaperone protein dnaJ-related F:unknown;P:unknown;C:unknown;PBO
At3g05350 819699 aminopeptidase/ hydrolase F:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAP
At4g17040 827412 ATP-dependent Clp protease proteolytic subunit, putative F:serine-type endopeptidase activity;P:proteolysis;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPMFV
At3g59870 825157 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP
At2g20570 816579 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
At5g03900 831927 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BPO
At2g04700 815013 ferredoxin thioredoxin reductase catalytic beta chain family protein F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA
At1g12410 837797 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At5g49970 835061 ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE) encodes the bifunctional pyridoxine (pyridoxamine) 5�-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)
At2g30950 817646 VAR2 (VARIEGATED 2) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.
At3g09250 820081 DNA binding / nuclease F:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;BPO
At4g15560 827230 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
At2g26340 817174 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P
At5g47840 834835 AMK2 (Adenosine monophosphate kinase) F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA
At3g04870 819647 ZDS (ZETA-CAROTENE DESATURASE) Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.
At3g08010 819992 ATAB2 Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.
At1g54350 841876 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPV
At5g38660 833856 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) mutant has Altered acclimation responses;
At5g12130 831086 PDE149 (PIGMENT DEFECTIVE 149) F:unknown;P:thylakoid membrane organization;C:chloroplast thylakoid membrane, integral to membrane;BOPAM
At5g16710 831532 DHAR3 (dehydroascorbate reductase 1) The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
At5g58330 835945 malate dehydrogenase (NADP), chloroplast, putative F:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA
At1g23310 838940 GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE) Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
At1g10360 837575 ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
At1g31940 840084 unknown protein F:unknown;P:unknown;C:plasma membrane;P
At3g56010 824767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P
At5g61410 836262 RPE Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA
At5g58140 835926 PHOT2 (PHOTOTROPIN 2) Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
At2g29360 817485 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV
At2g26540 817195 HEMD F:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAF
At5g57030 835806 LUT2 (LUTEIN DEFICIENT 2) Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase
At5g46110 834652 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
At2g21960 816732 unknown protein F:unknown;P:unknown;C:chloroplast;PBO
At4g01150 828181 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO
At5g17230 831587 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase Encodes phytoene synthase.
At4g04640 825797 ATPC1 One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.
At5g60750 836196 CAAX amino terminal protease family protein F:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPA
At4g04210 825736 PUX4 Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4)
At3g06330 819807 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV

Gene ID	Repr. ID	Gene Name	Functional Description
At3g55130	824679	ATWBC19 (White-Brown Complex homolog 19)	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.
At3g58010	824970	unknown protein	F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO
At5g13720	831217	-	F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPA
At4g25650	828670	ACD1-LIKE (ACD1-LIKE)	Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.
At1g21640	838766	NADK2	Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.
At4g29070	829028	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g49940	835057	NFU2 (NIFU-LIKE PROTEIN 2)	Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
At1g49970	841420	CLPR1	Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At2g01620	814691	MEE11 (maternal effect embryo arrest 11)	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO
At3g26085	822206	CAAX amino terminal protease family protein	F:molecular_function unknown;P:proteolysis;C:membrane;BOPA
At2g20725	816602	CAAX amino terminal protease family protein	F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA
At5g02790	831798	In2-1 protein, putative	F:unknown;P:response to cadmium ion;C:unknown;PBMOFA
At5g52030	835278	TraB protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP
At5g48590	834916	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At1g09130	837432	ATP-dependent Clp protease proteolytic subunit, putative	F:serine-type endopeptidase activity;P:proteolysis;C:in 6 components;BOPMFV
At1g02475	839236	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP
At1g54520	841894	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOM
At1g04530	839500	binding	F:binding;P:unknown;C:unknown;PBOMAF
At2g35490	818114	plastid-lipid associated protein PAP, putative	F:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOM
At5g03910	830269	ATATH12	member of ATH subfamily
At1g67840	843110	CSK (CHLOROPLAST SENSOR KINASE)	Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
At5g22830	832346	ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)	putative Mg(2+) transport protein
At1g10500	837590	ATCPISCA (chloroplast-localized IscA-like protein)	Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.
At1g69390	843271	ATMINE1 (Arabidopsis homologue of bacterial MinE 1)	Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.
At1g67280	843048	lactoylglutathione lyase, putative / glyoxalase I, putative	F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA
At1g28140	839708	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO
At1g32160	840108	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At3g06510	819829	SFR2 (SENSITIVE TO FREEZING 2)	Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
At4g14210	827061	PDS3 (PHYTOENE DESATURASE 3)	Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.
At5g61670	836289	-	Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.
At2g34310	817992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB
At4g37200	829874	HCF164	Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.
At1g21590	838760	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA
At1g48450	841266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At5g33280	833300	chloride channel-like (CLC) protein, putative	F:anion channel activity, voltage-gated chloride channel activity;P:chloride transport;C:intracellular, membrane;BMOFPA
At4g35760	829729	-	F:unknown;P:unknown;C:chloroplast;OBP
At2g28800	817429	ALB3 (ALBINO 3)	member of Chloroplast membrane protein ALBINO3 family
At3g56050	824771	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA
At1g07700	837283	thioredoxin family protein	F:unknown;P:cell redox homeostasis;C:chloroplast stroma, chloroplast;MPOFBAV
At1g76730	844007	5-formyltetrahydrofolate cyclo-ligase family protein	F:catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;MBAOPF
At1g77930	844128	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV
At5g38990	833891	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA
At4g14910	827149	imidazoleglycerol-phosphate dehydratase, putative	F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM
At5g45170	834553	CbbY protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO
At2g42590	818859	GRF9 (GENERAL REGULATORY FACTOR 9)	14-3-3 gene. Binds calcium and displays induced structural changes.
At3g27925	822416	DEGP1 (DegP protease 1)	Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.
At1g66670	842985	CLPP3	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At1g02560	839433	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At1g35340	840423	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;BOPFM
At4g03520	825653	ATHM2	chloroplast localized thioredoxin, similar to prokaryotic types.
At4g35450	829697	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
At5g03880	831679	electron carrier	F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM
At2g44870	819096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB
At1g08490	837370	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.
At3g52155	824380	-	F:unknown;P:unknown;C:chloroplast;OBP
At5g40060	834003	ATP binding / nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknown
At1g68830	843215	STN7 (Stt7 homolog STN7)	STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation
At5g08740	830775	NDC1 (NAD(P)H dehydrogenase C1)	F:NADH dehydrogenase activity;P:unknown;C:intrinsic to mitochondrial inner membrane, cell wall, chloroplast, plastoglobule;BOFMAP
At1g32070	840099	ATNSI (NUCLEAR SHUTTLE INTERACTING)	Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.
At1g02910	839350	LPA1 (LOW PSII ACCUMULATION1)	Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.
At1g50170	841439	ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)	encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis
At5g06130	830500	chaperone protein dnaJ-related	F:unknown;P:unknown;C:unknown;PBO
At3g05350	819699	aminopeptidase/ hydrolase	F:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAP
At4g17040	827412	ATP-dependent Clp protease proteolytic subunit, putative	F:serine-type endopeptidase activity;P:proteolysis;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPMFV
At3g59870	825157	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP
At2g20570	816579	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
At5g03900	831927	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BPO
At2g04700	815013	ferredoxin thioredoxin reductase catalytic beta chain family protein	F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA
At1g12410	837797	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At5g49970	835061	ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)	encodes the bifunctional pyridoxine (pyridoxamine) 5�-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)
At2g30950	817646	VAR2 (VARIEGATED 2)	Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.
At3g09250	820081	DNA binding / nuclease	F:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;BPO
At4g15560	827230	CLA1 (CLOROPLASTOS ALTERADOS 1)	Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
At2g26340	817174	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P
At5g47840	834835	AMK2 (Adenosine monophosphate kinase)	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA
At3g04870	819647	ZDS (ZETA-CAROTENE DESATURASE)	Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.
At3g08010	819992	ATAB2	Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.
At1g54350	841876	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPV
At5g38660	833856	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	mutant has Altered acclimation responses;
At5g12130	831086	PDE149 (PIGMENT DEFECTIVE 149)	F:unknown;P:thylakoid membrane organization;C:chloroplast thylakoid membrane, integral to membrane;BOPAM
At5g16710	831532	DHAR3 (dehydroascorbate reductase 1)	The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
At5g58330	835945	malate dehydrogenase (NADP), chloroplast, putative	F:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA
At1g23310	838940	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
At1g10360	837575	ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
At1g31940	840084	unknown protein	F:unknown;P:unknown;C:plasma membrane;P
At3g56010	824767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P
At5g61410	836262	RPE	Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA
At5g58140	835926	PHOT2 (PHOTOTROPIN 2)	Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
At2g29360	817485	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV
At2g26540	817195	HEMD	F:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAF
At5g57030	835806	LUT2 (LUTEIN DEFICIENT 2)	Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase
At5g46110	834652	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
At2g21960	816732	unknown protein	F:unknown;P:unknown;C:chloroplast;PBO
At4g01150	828181	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO
At5g17230	831587	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	Encodes phytoene synthase.
At4g04640	825797	ATPC1	One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.
At5g60750	836196	CAAX amino terminal protease family protein	F:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPA
At4g04210	825736	PUX4	Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4)
At3g06330	819807	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV

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Query process ID	GO:0042891
Process name	The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells.
Organism	Arabidopsis thaliana

Biological process to genes

Query process ID GO:0042891 Process name The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells. Organism Arabidopsis thaliana

The upper GO terms

Process ID Gene number Process name GO:00158930The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells.

The lower GO terms

Genes co-expressed with At3g55130

At3g55130NF: 0.38%ile: 52.5SF: 0.02SP: 0.01SR: 1.00

Process ID Gene number Process name
GO:0015893 0 The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells.

At3g55130 NF: 0.38 %ile: 52.5 SF: 0.02 SP: 0.01 SR: 1.00