Biological process to genes

Query process ID GO:0042891
Process name The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of, within or between cells.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
SAt3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.O.I.H.G.

The upper GO terms

Process ID Gene number Process name
GO:00158930The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of, within or between cells.

The lower GO terms

Process ID Gene number Process name
GO:00158960The directed movement of nalidixic acid into, out of, within or between cells. Nalidixic acid is a synthetic antibiotic that interferes with DNA gyrase and inhibits prokaryotic replication.
GO:00159010The directed movement of cycloheximide into, out of, within or between cells. Cycloheximide is an antibiotic produced by Streptomyces which interferes with protein synthesis in eukaryotes.
GO:00159042The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
GO:00159050The directed movement of bicyclomycin into, out of, within or between cells. Bicyclomycin (or bicozamycin) is an antibacterial drug often used as a livestock feed additive.
GO:00428840The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of, within or between cells.
GO:00428920The directed movement of chloramphenicol, a broad-spectrum antibiotic that inhibits bacterial protein synthesis, into, out of, within or between cells.
GO:00428930The directed movement of polymyxin, any of a group of related antibiotics produced by Bacillus polymyxa and active against most Gram-negative bacteria, into, out of, within or between cells.
GO:00428940The directed movement of fosmidomycin, a phosphonic acid derivative with potent activity against Gram-negative organisms, into, out of, within or between cells.

Genes co-expressed with At3g55130

At3g55130NF: 0.38%ile: 52.5SF: 0.02SP: 0.01SR: 1.00

Gene IDRepr. IDGene NameFunctional Description
At3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.
At3g58010824970unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO
At5g13720831217-F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPA
At4g25650828670ACD1-LIKE (ACD1-LIKE)Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.
At1g21640838766NADK2Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.
At4g29070829028-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g49940835057NFU2 (NIFU-LIKE PROTEIN 2)Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
At1g49970841420CLPR1Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At2g01620814691MEE11 (maternal effect embryo arrest 11)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO
At3g26085822206CAAX amino terminal protease family proteinF:molecular_function unknown;P:proteolysis;C:membrane;BOPA
At2g20725816602CAAX amino terminal protease family proteinF:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA
At5g02790831798In2-1 protein, putativeF:unknown;P:response to cadmium ion;C:unknown;PBMOFA
At5g52030835278TraB protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP
At5g48590834916unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At1g09130837432ATP-dependent Clp protease proteolytic subunit, putativeF:serine-type endopeptidase activity;P:proteolysis;C:in 6 components;BOPMFV
At1g02475839236-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP
At1g54520841894unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOM
At2g35490818114plastid-lipid associated protein PAP, putativeF:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOM
At5g03910830269ATATH12member of ATH subfamily
At1g67840843110CSK (CHLOROPLAST SENSOR KINASE)Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport protein
At1g10500837590ATCPISCA (chloroplast-localized IscA-like protein)Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.
At1g69390843271ATMINE1 (Arabidopsis homologue of bacterial MinE 1)Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.
At1g67280843048lactoylglutathione lyase, putative / glyoxalase I, putativeF:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA
At1g28140839708unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO
At1g32160840108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At3g06510819829SFR2 (SENSITIVE TO FREEZING 2)Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
At4g14210827061PDS3 (PHYTOENE DESATURASE 3)Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.
At5g61670836289-Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.
At2g34310817992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB
At4g37200829874HCF164Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.
At1g21590838760protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA
At1g48450841266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO
At5g33280833300chloride channel-like (CLC) protein, putativeF:anion channel activity, voltage-gated chloride channel activity;P:chloride transport;C:intracellular, membrane;BMOFPA
At2g28800817429ALB3 (ALBINO 3)member of Chloroplast membrane protein ALBINO3 family
At3g56050824771protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA
At1g07700837283thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:chloroplast stroma, chloroplast;MPOFBAV
At1g767308440075-formyltetrahydrofolate cyclo-ligase family proteinF:catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;MBAOPF
At1g77930844128DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV
At5g38990833891protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA
At4g14910827149imidazoleglycerol-phosphate dehydratase, putativeF:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM
At5g45170834553CbbY protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO
At2g42590818859GRF9 (GENERAL REGULATORY FACTOR 9)14-3-3 gene. Binds calcium and displays induced structural changes.
At3g27925822416DEGP1 (DegP protease 1)Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.
At1g66670842985CLPP3One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At1g02560839433CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At1g35340840423ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;BOPFM
At4g03520825653ATHM2chloroplast localized thioredoxin, similar to prokaryotic types.
At4g35450829697AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
At5g03880831679electron carrierF:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM
At2g44870819096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB
At1g08490837370CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.
At5g40060834003ATP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:apoptosis;C:unknown
At1g68830843215STN7 (Stt7 homolog STN7)STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation
At5g08740830775NDC1 (NAD(P)H dehydrogenase C1)F:NADH dehydrogenase activity;P:unknown;C:intrinsic to mitochondrial inner membrane, cell wall, chloroplast, plastoglobule;BOFMAP
At1g32070840099ATNSI (NUCLEAR SHUTTLE INTERACTING)Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.
At1g02910839350LPA1 (LOW PSII ACCUMULATION1)Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.
At1g50170841439ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis
At5g06130830500chaperone protein dnaJ-relatedF:unknown;P:unknown;C:unknown;PBO
At3g05350819699aminopeptidase/ hydrolaseF:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAP
At4g17040827412ATP-dependent Clp protease proteolytic subunit, putativeF:serine-type endopeptidase activity;P:proteolysis;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPMFV
At3g59870825157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP
At2g20570816579GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
At5g03900831927-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BPO
At2g04700815013ferredoxin thioredoxin reductase catalytic beta chain family proteinF:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA
At1g12410837797CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
At5g49970835061ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)encodes the bifunctional pyridoxine (pyridoxamine) 5-phosphate oxidase (PPOX)(EC that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)
At2g30950817646VAR2 (VARIEGATED 2)Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.
At3g09250820081DNA binding / nucleaseF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;BPO
At4g15560827230CLA1 (CLOROPLASTOS ALTERADOS 1)Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
At2g26340817174unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P
At5g47840834835AMK2 (Adenosine monophosphate kinase)F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA
At3g04870819647ZDS (ZETA-CAROTENE DESATURASE)Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.
At3g08010819992ATAB2Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.
At1g54350841876ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPV
At5g38660833856APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)mutant has Altered acclimation responses;
At5g12130831086PDE149 (PIGMENT DEFECTIVE 149)F:unknown;P:thylakoid membrane organization;C:chloroplast thylakoid membrane, integral to membrane;BOPAM
At5g16710831532DHAR3 (dehydroascorbate reductase 1)The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
At5g58330835945malate dehydrogenase (NADP), chloroplast, putativeF:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFA
At1g23310838940GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
At1g10360837575ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
At1g31940840084unknown proteinF:unknown;P:unknown;C:plasma membrane;P
At3g56010824767unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P
At5g61410836262RPEArabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA
At5g58140835926PHOT2 (PHOTOTROPIN 2)Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
At2g29360817485tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV
At2g26540817195HEMDF:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAF
At5g57030835806LUT2 (LUTEIN DEFICIENT 2)Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase
At5g46110834652APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
At2g21960816732unknown proteinF:unknown;P:unknown;C:chloroplast;PBO
At4g01150828181unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO
At5g17230831587phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseEncodes phytoene synthase.
At4g04640825797ATPC1One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.
At5g60750836196CAAX amino terminal protease family proteinF:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPA
At4g04210825736PUX4Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4)
At3g06330819807zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV

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