CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0009700

Process name The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response.

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
X At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. O.I. H.G.
X At4g23100 828409 GSH1 (GLUTAMATE-CYSTEINE LIGASE) Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis. Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective. O.I. H.G.

The upper GO terms

Process ID Gene number Process name
GO:0042435 0 The chemical reactions and pathways resulting in the formation of compounds derived from indole (2,3-benzopyrrole).
GO:0044271 0 The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds.
GO:0046217 0 The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response.
GO:0052315 0 The chemical reactions and pathways resulting in the formation of phytoalexins, any of a range of substances produced by plants as part of their defense response.

The lower GO terms

Process ID Gene number Process name
GO:0010120 8 The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.

Genes co-expressed with At3g26830

At3g26830 NF: 0.40 %ile: 55.9 SF: 0.29 SP: 0.20 SR: 0.50

Gene ID Repr. ID Gene Name Functional Description
At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.
At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.
At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.
At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2
At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA

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