CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0006950

Process name A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
X At1g02930 839515 ATGSTF6 (GLUTATHIONE S-TRANSFERASE) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G.
X At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. H.G.
X At1g13740 837934 AFP2 (ABI FIVE BINDING PROTEIN 2) Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent. O.I. H.G.
X At1g16540 838224 ABA3 (ABA DEFICIENT 3) Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. O.I. H.G.
X At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. H.G.
X At1g55870 842037 AHG2 (ABA-HYPERSENSITIVE GERMINATION 2) Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. O.I. H.G.
X At1g79440 844282 ALDH5F1 Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004). O.I. H.G.
X At2g01180 814646 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. O.I. H.G.
X At2g28190 817365 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. O.I. H.G.
X At2g41310 818730 ATRR3 (RESPONSE REGULATOR 3) Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling. O.I. H.G.
X At3g04120 819567 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. O.I. H.G.
X At3g06110 819784 MKP2 (MAPK PHOSPHATASE 2) Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants. O.I. H.G.
X At3g10985 2745879 SAG20 (SENESCENCE ASSOCIATED GENE 20) A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. O.I. H.G.
X At3g16770 820929 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. O.I. H.G.
X At3g19290 821463 ABF4 (ABRE BINDING FACTOR 4) bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. O.I. H.G.
X At3g22370 821806 AOX1A (ALTERNATIVE OXIDASE 1A) Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. O.I. H.G.
X At3g26680 822280 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage. O.I. H.G.
X At3g27280 822347 ATPHB4 (PROHIBITIN 4) Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues O.I. H.G.
X At3g46550 823808 SOS5 (salt overly sensitive 5) Isolated in a screen for salt hypersensitive mutants. Mutants have thinner cell walls, abnormal siliques and root growth is inhibited under salt stress. The gene has similarity to arabinogalactan proteins and domains associated with cell adhesion. O.I. H.G.
X At3g50830 824247 COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2) cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable. O.I. H.G.
X At4g10960 826696 UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5) Encodes a protein with UDP-D-glucose 4-epimerase activity. O.I. H.G.
X At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. O.I. H.G.
X At4g24275 828530 - Identified as a screen for stress-responsive genes. O.I. H.G.
X At4g28510 828969 ATPHB1 (PROHIBITIN 1) prohibitin 1 (Atphb1) O.I. H.G.
X At4g28680 828986 tyrosine decarboxylase, putative Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers. O.I. H.G.
X At4g34000 829547 ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3) Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. O.I. H.G.
X At5g01410 831738 RSR4 (REDUCED SUGAR RESPONSE 4) Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. O.I. H.G.
X At5g08470 830746 PEX1 (peroxisome 1) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals. O.I. H.G.
X At5g40770 834077 ATPHB3 (PROHIBITIN 3) prohibitin 3 O.I. H.G.
X At5g47100 834756 CBL9 member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins. CBL9 interacts with and targets CIPK23 to the plasma membrane in vivo. O.I. H.G.
X At5g56550 835756 OXS3 (OXIDATIVE STRESS 3) Encodes OXIDATIVE STRESS 3 (OXS3)， involved in tolerance to heavy metals and oxidative stress. O.I. H.G.
X At5g66400 836772 RAB18 (RESPONSIVE TO ABA 18) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells. O.I. H.G.
X At5g67300 836865 MYBR1 (MYB DOMAIN PROTEIN R1) Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli. O.I. H.G.
S At1g10470 837587 ARR4 (RESPONSE REGULATOR 4) Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. O.I. H.G.
S At1g49720 841395 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1) Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. O.I. H.G.
S At2g36270 818199 ABI5 (ABA INSENSITIVE 5) Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. O.I. H.G.
S At2g43790 818982 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development. O.I. H.G.
S At3g45640 823706 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. O.I. H.G.
S At3g56850 824852 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation. O.I. H.G.
S At4g01370 828151 ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Its substrates include MKS1. O.I. H.G.
S At4g34890 829641 XDH1 (XANTHINE DEHYDROGENASE 1) Encodes a xanthine dehydrogenase, involved in purine catabolism. Ubiquitously expressed, but the transcript level is altered during aging, senescence, salt and cold stress, ABA treatment, and dark treatment. RNAi lines that suppress both XDH1 and XDH2 produce small plants with reduced fertility and accelerated leaf senescence. O.I. H.G.
S At5g42910 834303 basic leucine zipper transcription factor (BZIP15) F:transcription factor activity, transcription activator activity, DNA binding;P:regulation of transcription, DNA-dependent, response to stress;C:nucleus;PMOFB O.I. H.G.
C At1g01170 839263 ozone-responsive stress-related protein, putative F:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;P O.I. H.G.
C At1g09740 837502 ethylene-responsive protein, putative F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. H.G.
C At1g11360 837678 universal stress protein (USP) family protein F:unknown;P:response to stress;C:cytosol, plasma membrane;PBMFAO O.I. H.G.
C At1g12270 837781 stress-inducible protein, putative F:binding;P:response to stress;C:unknown;OMBPFAV O.I. H.G.
C At1g20440 838632 COR47 (COLD-REGULATED 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. O.I. H.G.
C At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. H.G.
C At1g29390 839814 COR314-TM2 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane. O.I. H.G.
C At1g48960 841318 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. H.G.
C At1g54410 841883 dehydrin family protein F:molecular_function unknown;P:response to water, response to stress;C:chloroplast;OMPFB O.I. H.G.
C At1g62740 842572 stress-inducible protein, putative F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV O.I. H.G.
C At1g68300 843159 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. H.G.
C At1g76180 843950 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated. O.I. H.G.
C At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV O.I. H.G.
C At2g21620 816700 RD2 Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. O.I. H.G.
C At2g23680 816899 stress-responsive protein, putative F:molecular_function unknown;P:response to stress;C:membrane;P O.I. H.G.
C At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. H.G.
C At2g47710 819384 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:vacuole;BPOAMF O.I. H.G.
C At3g01520 821122 universal stress protein (USP) family protein F:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOF O.I. H.G.
C At3g03270 821303 universal stress protein (USP) family protein / early nodulin ENOD18 family protein F:unknown;P:response to stress;C:plasma membrane, membrane;PFMBO O.I. H.G.
C At3g03290 821301 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMOF O.I. H.G.
C At3g11930 820366 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. H.G.
C At3g17020 820958 universal stress protein (USP) family protein F:molecular_function unknown;P:response to cold, response to stress;C:plasma membrane;BPAFOM O.I. H.G.
C At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. H.G.
C At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. O.I. H.G.
C At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM O.I. H.G.
C At3g53990 824566 universal stress protein (USP) family protein F:molecular_function unknown;P:response to cold, response to stress;C:cellular_component unknown;BPAOFM O.I. H.G.
C At3g58450 825014 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. H.G.
C At3g62550 825429 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:vacuole;BPAOMF O.I. H.G.
C At4g12400 826849 stress-inducible protein, putative F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV O.I. H.G.
C At4g27320 828840 universal stress protein (USP) family protein Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase. O.I. H.G.
C At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P O.I. H.G.
C At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. H.G.
C At4g39130 830068 dehydrin family protein F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO O.I. H.G.
C At5g14680 831320 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAMOF O.I. H.G.
C At5g17390 831605 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;MOPVFB O.I. H.G.
C At5g54430 835531 universal stress protein (USP) family protein Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase. O.I. H.G.
L At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. H.G.
L At1g16760 838247 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At1g21590 838760 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. H.G.
L At1g69080 843240 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PM O.I. H.G.
L At1g77280 844064 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At2g07020 815272 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:unknown;MPOBFVA O.I. H.G.
L At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At3g12050 820379 Aha1 domain-containing protein F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB O.I. H.G.
L At3g20200 821564 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At3g21210 821674 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POM O.I. H.G.
L At3g53770 824544 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:response to stress;C:unknown;P O.I. H.G.
L At4g13450 826977 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. H.G.
L At4g25160 828619 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA O.I. H.G.
L At4g31230 829250 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At5g35380 833499 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.
L At5g57670 835873 - - O.I. H.G.
L At5g63940 836515 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	O.I.	H.G.
X	At1g02930	839515	ATGSTF6 (GLUTATHIONE S-TRANSFERASE)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	H.G.
X	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	H.G.
X	At1g13740	837934	AFP2 (ABI FIVE BINDING PROTEIN 2)	Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.	O.I.	H.G.
X	At1g16540	838224	ABA3 (ABA DEFICIENT 3)	Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer.	O.I.	H.G.
X	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	H.G.
X	At1g55870	842037	AHG2 (ABA-HYPERSENSITIVE GERMINATION 2)	Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.	O.I.	H.G.
X	At1g79440	844282	ALDH5F1	Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).	O.I.	H.G.
X	At2g01180	814646	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	O.I.	H.G.
X	At2g28190	817365	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.	O.I.	H.G.
X	At2g41310	818730	ATRR3 (RESPONSE REGULATOR 3)	Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.	O.I.	H.G.
X	At3g04120	819567	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.	O.I.	H.G.
X	At3g06110	819784	MKP2 (MAPK PHOSPHATASE 2)	Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.	O.I.	H.G.
X	At3g10985	2745879	SAG20 (SENESCENCE ASSOCIATED GENE 20)	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.	O.I.	H.G.
X	At3g16770	820929	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.	O.I.	H.G.
X	At3g19290	821463	ABF4 (ABRE BINDING FACTOR 4)	bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.	O.I.	H.G.
X	At3g22370	821806	AOX1A (ALTERNATIVE OXIDASE 1A)	Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.	O.I.	H.G.
X	At3g26680	822280	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.	O.I.	H.G.
X	At3g27280	822347	ATPHB4 (PROHIBITIN 4)	Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues	O.I.	H.G.
X	At3g46550	823808	SOS5 (salt overly sensitive 5)	Isolated in a screen for salt hypersensitive mutants. Mutants have thinner cell walls, abnormal siliques and root growth is inhibited under salt stress. The gene has similarity to arabinogalactan proteins and domains associated with cell adhesion.	O.I.	H.G.
X	At3g50830	824247	COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)	cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable.	O.I.	H.G.
X	At4g10960	826696	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)	Encodes a protein with UDP-D-glucose 4-epimerase activity.	O.I.	H.G.
X	At4g12720	826884	NUDT7	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	O.I.	H.G.
X	At4g24275	828530	-	Identified as a screen for stress-responsive genes.	O.I.	H.G.
X	At4g28510	828969	ATPHB1 (PROHIBITIN 1)	prohibitin 1 (Atphb1)	O.I.	H.G.
X	At4g28680	828986	tyrosine decarboxylase, putative	Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.	O.I.	H.G.
X	At4g34000	829547	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	O.I.	H.G.
X	At5g01410	831738	RSR4 (REDUCED SUGAR RESPONSE 4)	Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.	O.I.	H.G.
X	At5g08470	830746	PEX1 (peroxisome 1)	an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.	O.I.	H.G.
X	At5g40770	834077	ATPHB3 (PROHIBITIN 3)	prohibitin 3	O.I.	H.G.
X	At5g47100	834756	CBL9	member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins. CBL9 interacts with and targets CIPK23 to the plasma membrane in vivo.	O.I.	H.G.
X	At5g56550	835756	OXS3 (OXIDATIVE STRESS 3)	Encodes OXIDATIVE STRESS 3 (OXS3)， involved in tolerance to heavy metals and oxidative stress.	O.I.	H.G.
X	At5g66400	836772	RAB18 (RESPONSIVE TO ABA 18)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.	O.I.	H.G.
X	At5g67300	836865	MYBR1 (MYB DOMAIN PROTEIN R1)	Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.	O.I.	H.G.
S	At1g10470	837587	ARR4 (RESPONSE REGULATOR 4)	Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	O.I.	H.G.
S	At1g49720	841395	ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)	Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.	O.I.	H.G.
S	At2g36270	818199	ABI5 (ABA INSENSITIVE 5)	Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.	O.I.	H.G.
S	At2g43790	818982	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.	O.I.	H.G.
S	At3g45640	823706	ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.	O.I.	H.G.
S	At3g56850	824852	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation.	O.I.	H.G.
S	At4g01370	828151	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Its substrates include MKS1.	O.I.	H.G.
S	At4g34890	829641	XDH1 (XANTHINE DEHYDROGENASE 1)	Encodes a xanthine dehydrogenase, involved in purine catabolism. Ubiquitously expressed, but the transcript level is altered during aging, senescence, salt and cold stress, ABA treatment, and dark treatment. RNAi lines that suppress both XDH1 and XDH2 produce small plants with reduced fertility and accelerated leaf senescence.	O.I.	H.G.
S	At5g42910	834303	basic leucine zipper transcription factor (BZIP15)	F:transcription factor activity, transcription activator activity, DNA binding;P:regulation of transcription, DNA-dependent, response to stress;C:nucleus;PMOFB	O.I.	H.G.
C	At1g01170	839263	ozone-responsive stress-related protein, putative	F:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;P	O.I.	H.G.
C	At1g09740	837502	ethylene-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	H.G.
C	At1g11360	837678	universal stress protein (USP) family protein	F:unknown;P:response to stress;C:cytosol, plasma membrane;PBMFAO	O.I.	H.G.
C	At1g12270	837781	stress-inducible protein, putative	F:binding;P:response to stress;C:unknown;OMBPFAV	O.I.	H.G.
C	At1g20440	838632	COR47 (COLD-REGULATED 47)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.	O.I.	H.G.
C	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	H.G.
C	At1g29390	839814	COR314-TM2	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.	O.I.	H.G.
C	At1g48960	841318	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	H.G.
C	At1g54410	841883	dehydrin family protein	F:molecular_function unknown;P:response to water, response to stress;C:chloroplast;OMPFB	O.I.	H.G.
C	At1g62740	842572	stress-inducible protein, putative	F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV	O.I.	H.G.
C	At1g68300	843159	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	H.G.
C	At1g76180	843950	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.	O.I.	H.G.
C	At2g21490	816688	LEA (DEHYDRIN LEA)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV	O.I.	H.G.
C	At2g21620	816700	RD2	Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.	O.I.	H.G.
C	At2g23680	816899	stress-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:membrane;P	O.I.	H.G.
C	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	H.G.
C	At2g47710	819384	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:vacuole;BPOAMF	O.I.	H.G.
C	At3g01520	821122	universal stress protein (USP) family protein	F:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOF	O.I.	H.G.
C	At3g03270	821303	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	F:unknown;P:response to stress;C:plasma membrane, membrane;PFMBO	O.I.	H.G.
C	At3g03290	821301	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMOF	O.I.	H.G.
C	At3g11930	820366	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	H.G.
C	At3g17020	820958	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to cold, response to stress;C:plasma membrane;BPAFOM	O.I.	H.G.
C	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	H.G.
C	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	H.G.
C	At3g50980	824262	XERO1 (DEHYDRIN XERO 1)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM	O.I.	H.G.
C	At3g53990	824566	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to cold, response to stress;C:cellular_component unknown;BPAOFM	O.I.	H.G.
C	At3g58450	825014	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	H.G.
C	At3g62550	825429	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:vacuole;BPAOMF	O.I.	H.G.
C	At4g12400	826849	stress-inducible protein, putative	F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV	O.I.	H.G.
C	At4g27320	828840	universal stress protein (USP) family protein	Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	O.I.	H.G.
C	At4g37220	829876	stress-responsive protein, putative	F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P	O.I.	H.G.
C	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	H.G.
C	At4g39130	830068	dehydrin family protein	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO	O.I.	H.G.
C	At5g14680	831320	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAMOF	O.I.	H.G.
C	At5g17390	831605	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;MOPVFB	O.I.	H.G.
C	At5g54430	835531	universal stress protein (USP) family protein	Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.	O.I.	H.G.
L	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	H.G.
L	At1g16760	838247	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At1g17540	838328	kinase	F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At1g21590	838760	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	H.G.
L	At1g69080	843240	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PM	O.I.	H.G.
L	At1g77280	844064	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At2g07020	815272	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:unknown;MPOBFVA	O.I.	H.G.
L	At2g24370	816973	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At3g12050	820379	Aha1 domain-containing protein	F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB	O.I.	H.G.
L	At3g20200	821564	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At3g21210	821674	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POM	O.I.	H.G.
L	At3g53770	824544	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:response to stress;C:unknown;P	O.I.	H.G.
L	At4g13450	826977	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	H.G.
L	At4g25160	828619	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA	O.I.	H.G.
L	At4g31230	829250	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At5g35380	833499	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.
L	At5g57670	835873	-	-	O.I.	H.G.
L	At5g63940	836515	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0050896 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

Process ID	Gene number	Process name
GO:0050896	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

The lower GO terms

Process ID Gene number Process name
GO:0001666 16 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
GO:0003299 0 The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells as a result of a disturbance in organismal or cellular homeostasis.
GO:0006952 0 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO:0006970 68 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
GO:0006974 16 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GO:0006979 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO:0006986 1 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
GO:0006991 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
GO:0009271 0 A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage.
GO:0009408 116 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GO:0009409 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GO:0009413 1 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating flooding, short-term immersion in water.
GO:0009414 148 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
GO:0009611 130 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GO:0009635 1 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
GO:0010610 0 Any process that modulates the propensity of mRNA molecules to degradation that is part of a change in state or activity of a cell as a result of an exogenous disturbance.
GO:0033554 0 A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0033555 0 A change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0034059 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%.
GO:0034405 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface.
GO:0042594 6 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
GO:0051409 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
GO:0051599 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it.
GO:0051788 3 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus.
GO:0055093 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension.

Process ID	Gene number	Process name
GO:0001666	16	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
GO:0003299	0	The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells as a result of a disturbance in organismal or cellular homeostasis.
GO:0006952	0	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO:0006970	68	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
GO:0006974	16	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GO:0006979	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO:0006986	1	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
GO:0006991	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
GO:0009271	0	A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage.
GO:0009408	116	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GO:0009409	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GO:0009413	1	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating flooding, short-term immersion in water.
GO:0009414	148	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
GO:0009611	130	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GO:0009635	1	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
GO:0010610	0	Any process that modulates the propensity of mRNA molecules to degradation that is part of a change in state or activity of a cell as a result of an exogenous disturbance.
GO:0033554	0	A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0033555	0	A change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0034059	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%.
GO:0034405	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface.
GO:0042594	6	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
GO:0051409	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
GO:0051599	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it.
GO:0051788	3	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus.
GO:0055093	0	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension.

Comparison with co-expressed genes

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Query process ID	GO:0006950
Process name	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Organism	Arabidopsis thaliana

Biological process to genes

The upper GO terms

Process ID Gene number Process name GO:00508960A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

The lower GO terms

Comparison with co-expressed genes

Process ID Gene number Process name
GO:0050896 0 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.