Biological process to genes

Query process ID GO:0006527
Process name The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. H.G. Other DB
LOs04g0107700AK110974.1-Peptidase C1A, papain family protein3e-3At3g19400cysteine proteinase, putativeO.I.H.G.
LOs08g0433000---0--O.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00065250The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
GO:00090650The chemical reactions and pathways resulting in the breakdown of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline.



The lower GO terms

Process ID Gene number Process name
GO:00101220The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including alanine, via ornithine.
GO:00194930The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline.
GO:00195440The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate.
GO:00195450The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including succinate.
GO:00195460The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.
GO:00195470The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine.
GO:00195480The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including spermine.



Genes co-expressed with Os04g0107700

Os04g0107700NF: 0.29%ile: 30.0SF: 0.25SP: 0.17SR: 0.50

Gene IDRepr. IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene name
Os04g0107700AK110974.1-Peptidase C1A, papain family protein3e-3At3g19400cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF
Os04g01962009632.m01071-O-methyltransferase, family 2 domain containingprotein1e-1At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.
Os03g0404800AK099537.1-3-beta hydroxysteroid dehydrogenase/isomerasefamily protein4e-2At1g47290AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)Encodes an enzyme with 3β-hydroxysteroid dehydrogenase/C4-decarboxylase activity in vitro. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the Arabidopsis gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.
Os05g0365600CB096565-Hydroxyisourate hydrolase2e+0At3g60130BGLU16 (BETA GLUCOSIDASE 16)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:unknown;BOPMFA
Os06g01923009634.m00877--3e-1At1g64340unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB
Os11g0439600AK069955.1-Nod factor binding lectin-nucleotidephosphohydrolase2e-1At5g18280ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination.



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