Biological process to genes

Query process ID GO:0006396
Process name Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Organism Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. H.G. Other DB
LOs01g0193600AK068784.1-Deoxyribonuclease/rho motif-related TRAM domaincontaining protein1e-15At3g21300RNA methyltransferase family proteinO.I.H.G.
LOs01g0742000BI306081-The start codon is not identified.3e-4At2g19870tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.
LOs01g0756400AK105125.1-Hypothetical protein5e-8At5g46250RNA recognition motif (RRM)-containing proteinO.I.H.G.
LOs01g0810100AK071916.1-Ribonuclease III domain containing protein3e-22At4g37510ribonuclease III family proteinO.I.H.G.
LOs02g0103900AK070601.1-Protein prenyltransferase domain containingprotein1e-3At4g28200-O.I.H.G.
LOs02g0245000AK119874.1-SWAP/Surp domain containing protein4e-13At1g14650SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family proteinO.I.H.G.
LOs02g0617700AK058997.1-RNA binding S1 domain containing protein4e-2At1g21280unknown proteinO.I.H.G.
LOs02g0772500AK100349.1-Protein prenyltransferase domain containingprotein4e-5At3g17740unknown proteinO.I.H.G.
LOs03g0370500AK063289.1--4e-34At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)O.I.H.G.
LOs03g0685100AK059852.1-contains InterPro domain(s): IPR0015372e+0At5g23510unknown proteinO.I.H.G.
LOs03g0809900AK103277.1-Tsunagi1e-1At3g60270uclacyanin, putativeO.I.H.G.
LOs03g0854200AK069107.1-3' exoribonuclease domain containing protein1e-8At3g462103' exoribonuclease family domain 1-containing proteinO.I.H.G.
LOs04g0683500AK071538.1-Adenosine deaminase acting on tRNA 13e+0At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)O.I.H.G.
LOs05g0108000AK065542.1-The start codon is not identified.4e-31At5g14460pseudouridine synthase/ transporterO.I.H.G.
LOs05g0141400AK071339.1-contains InterPro domain(s): IPR0015374e-14At4g15520tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.
LOs05g0289400AK100478.1-Cell cycle control protein cwf47e-24At5g41770crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.
LOs05g0318300AK065362.1-Uncharacterised conserved protein UCP005520 familyprotein7e-4At2g25460-O.I.H.G.
LOs05g0447700AK071331.1-Ferritin/ribonucleotide reductase-like familyprotein2e-5At1g07280bindingO.I.H.G.
LOs06g0358800AK107404.1-Ribonuclease III domain containing protein3e+0At1g49930-O.I.H.G.
LOs06g0489200AK103574.1-SWAP/Surp domain containing protein9e-15At5g23080TGH (TOUGH)O.I.H.G.
LOs06g0717400AK072887.1-Pseudouridine synthase, Rlu family protein2e-17At1g76050pseudouridine synthase family proteinO.I.H.G.
LOs07g0203300AK103882.1-RNA binding S1 domain containing protein6e-12At3g11964RNA bindingO.I.H.G.
LOs07g0598100AK068136.1-Hydroxyproline-rich glycoprotein DZ-HRGP precursor4e-3At2g19000-O.I.H.G.
LOs07g0636000AK102460.1-Cbf5p4e-22At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)O.I.H.G.
LOs08g0113200AK102710.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein4e-1At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.
LOs08g0323600AK067514.1-Glycoside hydrolase, starch-binding domaincontaining protein5e-7At2g04270RNEE/G (RNASE E/G-LIKE)O.I.H.G.
LOs08g0379000AK105647.1-Protein prenyltransferase domain containingprotein4e-2At2g21970SEP2 (STRESS ENHANCED PROTEIN 2)O.I.H.G.
LOs08g0542900AK074001.1-Lupus La protein family protein2e-1At2g43970La domain-containing proteinO.I.H.G.
LOs09g0103500AK065573.1-Pseudouridine synthase domain containing protein8e-1At2g10920unknown proteinO.I.H.G.
LOs10g0328700AK070180.1-TPR-like domain containing protein2e-2At5g44450methyltransferaseO.I.H.G.
LOs10g0498600AK071378.1-RNA-processing protein, HAT helix repeatcontaining protein2e-31At4g03430EMB2770 (EMBRYO DEFECTIVE 2770)O.I.H.G.

The upper GO terms

Process ID Gene number Process name
GO:00104670The process by which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
GO:00160700The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

The lower GO terms

Process ID Gene number Process name
GO:00003790The process by which the tertiary structure of a tRNA type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs.
GO:00009630The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules; occurs in the mitochondrion.
GO:00009660Any process involved in forming the mature 5' end of an RNA molecule.
GO:000639714Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO:000838017The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
GO:00094520The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent RNA polymerase II transcript.
GO:00310500Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function.
GO:00311230Any process involved in forming the mature 3' end of an RNA molecule.
GO:00314250The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules.
GO:00331680The process by which double-stranded siRNA molecules are converted to single-stranded siRNAs; required for the formation of a mature RITS complex during RNA interference.
GO:00344700Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules.
GO:00700550The process by which the tertiary structure of a HAC1 type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs.

Comparison with co-expressed genes

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