Biological process to genes

Query process ID	GO:0006357
Process name	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Organism	Oryza sativa

Click Gene ID to show a list of co-expressed genes.

ECC	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	Other DB

The upper GO terms

Process ID	Gene number	Process name
GO:0006355	0	Any process that modulates the frequency, rate or extent of DNA-dependent transcription.

The lower GO terms

Process ID	Gene number	Process name
GO:0000083	0	Any process that regulates transcription such that the target genes are transcribed as part of the G1/S phase of the mitotic cell cycle.
GO:0000114	0	Any process that regulates transcription such that the target genes are transcribed as part of the G1 phase of the mitotic cell cycle.
GO:0000115	0	A cell cycle process that regulates transcription such that the target genes are transcribed as part of the S phase of the mitotic cell cycle.
GO:0000116	0	Any process that regulates transcription such that the target genes are transcribed as part of the G2 phase of the mitotic cell cycle.
GO:0000117	0	Any process that regulates transcription such that the target genes are transcribed as part of the G2/M phase of the mitotic cell cycle.
GO:0000122	0	Any process that stops, prevents or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0000429	0	Any process involving carbon catabolites that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0003256	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell.
GO:0003258	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of an endocardial precursor cell.
GO:0006358	0	Any process that modulates the frequency, rate or extent of global transcription from Pol II promoter.
GO:0010551	0	Any process that modulates the frequency, rate or extent of the specifically regulated synthesis of RNA from DNA encoding a specific gene or set of genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter.
GO:0010672	0	A cell cycle process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter during meiosis.
GO:0016245	0	The production of an RNA polymerase II enzyme where the carboxy-terminal domain (CTD) of the largest subunit is extensively phosphorylated, as a result of activation of kinases, deactivation of phosphatases, or both. This phosphorylation occurs during the initiation phase and is required for the transition to the elongation phase. Specific types of phosphorylation within the CTD are associated with recruitment of complexes such as the capping enzyme or 3'-RNA processing machinery to the elongating RNA polymerase complex.
GO:0034243	0	Any process that modulates the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II.
GO:0043618	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0045944	0	Any process that activates or increases the frequency, rate or extent of transcription from the RNA polymerase II promoter.
GO:0046021	0	A cell cycle process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter during mitosis.
GO:0060260	0	Any process that modulates the rate, frequency or extent of a process involved in starting transcription from the RNA polymerase II promoter.
GO:0060500	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the branching morphogenesis by which the initial primordium of the lung is formed.
GO:0060597	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the formation of the mammary line, placode or bud.
GO:0060807	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that ultimately results in a cell being specified to adopt a definitive endodermal cell fate.
GO:0060850	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate.
GO:0090019	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter contributing to the formation of the anterior neural plate.
GO:0090020	0	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter contributing to the formation of the posterior neural plate.

Comparison with co-expressed genes

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