RnR The prediction of regulatory relationships associated with At5g43270

QueryAt5g43270
DescriptionSPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)
RAFL IDpda13000
C.R.F
R.O.X.L.10/10 lines
P.O.X. 100.0

Jump to MassBase to obtain the original metabolomics dataset of this over-expression experiment.

Click here to show genes regulating the gene of interest.

Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At5g43270

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At3g45140 121.5 100.0 0.529 LOX2 (LIPOXYGENASE 2)
At3g28550 51.4 100.0 0.142 proline-rich extensin-like family protein
At3g27660 49.8 100.0 0.037 OLEO4 (OLEOSIN 4)
At5g43270 48.2 100.0 1.000 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)
At4g12160 45.4 100.0 0.139 -
At5g35670 40.8 100.0 0.526 iqd33 (IQ-domain 33)
At3g29780 39.4 100.0 0.221 RALFL27 (ralf-like 27)
At1g42630 37.8 100.0 0.165 transposable element gene
At1g61320 34.2 100.0 0.110 -
At3g32000 33.3 100.0 0.149 transposable element gene
At1g28270 30.3 100.0 0.056 RALFL4 (ralf-like 4)
At5g45850 29.3 100.0 0.623 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM
At3g50295 27.4 99.9 0.209 -
At3g47440 26.5 99.9 0.032 TIP5
At2g05960 25.5 99.9 0.112 transposable element gene
At2g16040 25.2 99.9 0.112 hAT dimerisation domain-containing protein / transposase-related
At2g43600 24.7 99.9 0.089 glycoside hydrolase family 19 protein
At2g28110 23.6 99.9 0.311 FRA8 (FRAGILE FIBER 8)
At1g61610 23.5 99.9 0.206 S-locus lectin protein kinase family protein
At1g58480 22.6 99.9 0.176 -
At3g26860 22.4 99.9 0.051 -
At1g21310 22.0 99.9 0.215 ATEXT3 (EXTENSIN 3)
At4g08560 21.4 99.9 0.272 APUM15 (Arabidopsis Pumilio 15)
At1g61120 21.3 99.9 0.122 TPS04 (TERPENE SYNTHASE 04)
At1g33811 21.1 99.9 0.459 GDSL-motif lipase/hydrolase family protein
At5g07160 21.0 99.9 0.160 DNA binding / transcription factor
At1g47480 20.4 99.9 0.281 hydrolase
At2g11690 20.4 99.9 0.139 transposable element gene
At1g50930 20.3 99.9 0.159 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB
At1g65990 20.2 99.9 0.140 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein
At3g12540 20.1 99.9 0.189 F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA
At5g11940 19.9 99.9 0.361 subtilase family protein
At1g35040 19.8 99.9 0.179 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At5g54150 19.7 99.9 0.359 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g12680 19.4 99.9 0.136 transposable element gene
At2g30220 19.4 99.9 0.168 GDSL-motif lipase/hydrolase family protein
At2g31035 19.1 99.9 0.237 -
At3g46500 19.0 99.9 0.281 oxidoreductase, 2OG-Fe(II) oxygenase family protein
At5g37940 18.8 99.9 0.315 NADP-dependent oxidoreductase, putative
At2g43060 18.5 99.9 0.378 transcription factor
At1g60240 18.3 99.9 0.023 apical meristem formation protein-related
At4g26220 18.3 99.9 0.196 caffeoyl-CoA 3-O-methyltransferase, putative
At5g02420 18.3 99.9 0.442 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g16520 18.2 99.9 0.163 -
At2g33010 18.1 99.9 0.233 ubiquitin-associated (UBA)/TS-N domain-containing protein
At1g69720 18.0 99.9 0.280 ho3 (HEME OXYGENASE 3)
At3g09130 17.9 99.9 0.404 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g63190 17.7 99.9 0.252 -
At2g18800 17.7 99.9 0.111 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)
At2g24620 17.4 99.9 0.209 S-locus glycoprotein family protein
At2g33690 17.4 99.9 0.097 late embryogenesis abundant protein, putative / LEA protein, putative
At2g40790 17.4 99.9 0.149 ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)
At5g60110 17.4 99.9 0.116 APUM18 (Arabidopsis Pumilio 18)
At4g04270 17.1 99.9 0.124 transposable element gene
At5g38950 17.0 99.9 0.236 germin-like protein-related
At5g25980 16.9 99.9 0.668 TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)
At5g67430 16.8 99.9 0.185 GCN5-related N-acetyltransferase (GNAT) family protein
At1g62090 16.6 99.9 0.307 -
At3g09140 16.6 99.9 0.022 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g59830 16.6 99.9 0.079 ankyrin protein kinase, putative
At5g40510 16.6 99.9 0.291 -
At1g51915 16.1 99.9 0.126 cryptdin protein-related
At1g61580 16.1 99.9 0.516 RPL3B (R-PROTEIN L3 B)
At2g12920 16.1 99.9 0.298 transposable element gene
At1g15040 15.8 99.9 0.157 glutamine amidotransferase-related
At2g23170 15.5 99.9 0.209 GH3.3
At3g43650 15.5 99.9 0.125 transposable element gene
At3g45130 15.5 99.9 0.409 LAS1
At5g16900 15.5 99.9 0.383 leucine-rich repeat protein kinase, putative
At5g48650 15.5 99.9 0.474 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
At5g34883 15.3 99.9 0.293 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At5g54470 15.1 99.9 0.403 zinc finger (B-box type) family protein
At5g37140 15.0 99.9 0.087 tRNA-splicing endonuclease positive effector-related
At3g06160 14.8 99.9 0.749 transcriptional factor B3 family protein
At5g35600 14.7 99.9 0.236 HDA7 (histone deacetylase7)
At2g32160 14.6 99.9 0.403 -

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 21.8 99.6 4/5 1 - - - - 88 101 149
GC-MS unknown 13.4 99.1 5/5 1 - - - - 149 167
GC-MS unknown 13.4 99.1 5/5 1 - - - - 128 110 100
GC-MS unknown 13.3 99.1 5/5 2 - - - - 111 89 288
GC-MS unknown 13.0 99.1 5/5 2 - - - - 121 241 149
GC-MS unknown 12.3 99.0 5/5 1 - - - - 85 99 113
LC-MS unknown 36.2 99.6 1/5 1.4 - - - 782.2555 783.2633
LC-MS unknown 28.4 99.5 1/5 1.7 - - - 1066.4257 1067.4335
LC-MS unknown 19.1 99.3 2/5 1.2 - - - 391.1483 392.1561
LC-MS unknown 12.5 99.0 1/5 1.3 - - - 208.0384 209.0462
LC-MS unknown 10.9 98.8 1/5 1.2 - - - 444.1204 445.1282
CE-MS unknown 79.5 100.0 1/5 2.0 - - - 566 565
CE-MS unknown 44.7 99.9 1/5 1.7 - - - 304 303
CE-MS unknown 31.6 99.8 3/5 1.6 - - - 310 309
CE-MS unknown 28.9 99.7 2/5 2.0 - - - 387 386
CE-MS unknown 23.7 99.6 2/5 1.5 - - - 523 522
CE-MS unknown 18.7 99.5 5/5 1.5 - - - 305 304
CE-MS unknown 15.2 99.4 2/5 1.7 - - - 332 331
CE-MS Glutathione (oxidized form) 12.5 99.2 5/5 1.6 KPC00857 C00127 C20H32N6O12S2 612.1519625 611
CE-MS unknown 11.8 99.1 1/5 1.7 - - - 340 339
CE-MS unknown 11.5 99.1 4/5 1.4 - - - 153 152
CE-MS unknown 10.6 99.0 5/5 1.9 - - - 119 120






Back to the RnR portal site

Back to the KAGIANA project homepage