RnR The prediction of regulatory relationships associated with At5g29000

QueryAt5g29000
Descriptionmyb family transcription factor
RAFL IDpda01393
C.R.C
R.O.X.L.16/19 lines
P.O.X. 100.0

Jump to MassBase to obtain the original metabolomics dataset of this over-expression experiment.

Click here to show genes regulating the gene of interest.

Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At5g29000

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At5g09530 212.3 100.0 0.394 hydroxyproline-rich glycoprotein family protein
At3g22620 207.0 100.0 0.418 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At4g38080 200.0 100.0 0.423 hydroxyproline-rich glycoprotein family protein
At5g41040 198.6 100.0 0.455 transferase family protein
At5g09480 197.2 100.0 0.354 hydroxyproline-rich glycoprotein family protein
At1g68850 195.0 100.0 0.385 peroxidase, putative
At2g48140 136.0 100.0 0.417 EDA4 (embryo sac development arrest 4)
At2g23540 126.7 100.0 0.423 GDSL-motif lipase/hydrolase family protein
At1g14350 119.6 100.0 0.611 FLP (FOUR LIPS)
At1g54540 117.4 100.0 0.337 -
At5g29000 106.1 100.0 1.000 myb family transcription factor
At3g22600 105.3 100.0 0.531 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At4g36610 100.8 100.0 0.458 hydrolase, alpha/beta fold family protein
At5g49620 96.4 100.0 0.544 AtMYB78 (myb domain protein 78)
At2g02820 93.3 100.0 0.551 MYB88 (myb domain protein 88)
At1g69080 92.5 100.0 0.443 universal stress protein (USP) family protein
At2g04800 81.3 100.0 0.479 F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P
At5g12420 81.2 100.0 0.526 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF
At1g53270 79.2 100.0 0.397 ABC transporter family protein
At1g70210 73.8 100.0 0.559 CYCD1
At3g44540 73.1 100.0 0.429 FAR4 (FATTY ACID REDUCTASE 4)
At5g23190 69.0 100.0 0.297 CYP86B1
At5g13900 66.6 100.0 0.383 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At4g17215 66.3 100.0 0.352 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g23800 60.0 100.0 0.301 SBP3 (selenium-binding protein 3)
At1g74460 57.7 100.0 0.433 GDSL-motif lipase/hydrolase family protein
At5g25890 56.9 100.0 0.578 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)
At2g33830 55.2 100.0 0.598 dormancy/auxin associated family protein
At5g58860 50.8 100.0 0.415 CYP86A1 (CYTOCHROME P450 86 A1)
At1g27030 49.0 100.0 0.595 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP
At5g13580 48.6 100.0 0.414 ABC transporter family protein
At5g09520 42.1 100.0 0.408 hydroxyproline-rich glycoprotein family protein
At5g65790 41.4 100.0 0.544 MYB68 (MYB DOMAIN PROTEIN 68)
At4g21850 41.0 100.0 0.486 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein
At1g48690 40.9 100.0 0.424 auxin-responsive GH3 family protein
At3g11430 39.2 100.0 0.286 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5)
At4g37250 39.1 100.0 0.514 leucine-rich repeat family protein / protein kinase family protein
At1g04220 39.0 100.0 0.454 KCS2 (3-KETOACYL-COA SYNTHASE 2)
At2g22510 39.0 100.0 0.419 hydroxyproline-rich glycoprotein family protein
At3g04570 38.8 100.0 0.485 DNA-binding protein-related
At2g18210 38.6 100.0 0.314 F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At3g06220 37.0 100.0 0.218 DNA binding / transcription factor
At3g21770 35.5 100.0 0.499 peroxidase 30 (PER30) (P30) (PRXR9)
At3g11280 32.9 100.0 0.764 myb family transcription factor
At3g53510 32.3 100.0 0.261 ABC transporter family protein
At5g51190 30.8 100.0 0.286 AP2 domain-containing transcription factor, putative
At5g40020 30.7 100.0 0.409 pathogenesis-related thaumatin family protein
At2g18370 30.5 100.0 0.483 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At5g44550 30.4 100.0 0.420 integral membrane family protein
At1g66140 28.0 100.0 0.700 ZFP4 (ZINC FINGER PROTEIN 4)
At3g01750 28.0 100.0 0.590 ankyrin repeat family protein
At2g01950 27.7 100.0 0.658 BRL2 (BRI1-LIKE 2)
At5g44580 27.5 100.0 0.514 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At3g28620 27.1 99.9 0.462 zinc finger (C3HC4-type RING finger) family protein
At3g13980 27.0 99.9 0.554 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV
At5g38760 26.7 99.9 0.037 F:molecular_function unknown;P:biological_process unknown;C:unknown;PF
At4g37940 26.3 99.9 0.407 AGL21
At5g07460 25.9 99.9 0.675 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)
At3g59740 25.7 99.9 0.428 receptor lectin kinase 3 (lecRK3)
At5g42500 25.7 99.9 0.414 disease resistance-responsive family protein
At2g23700 25.1 99.9 0.609 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF
At5g65970 24.5 99.9 0.542 MLO10 (MILDEW RESISTANCE LOCUS O 10)
At2g48130 24.2 99.9 0.421 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At2g33320 23.7 99.9 0.110 C2 domain-containing protein
At2g47200 23.7 99.9 0.436 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g43670 23.6 99.9 0.358 glycosyl hydrolase family protein 17
At3g13760 23.5 99.9 0.458 DC1 domain-containing protein
At1g69150 23.3 99.9 0.447 DC1 domain-containing protein
At1g44050 23.0 99.9 0.379 DC1 domain-containing protein
At3g25640 23.0 99.9 0.476 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g26120 22.9 99.9 0.192 glycine-rich protein
At3g45840 22.7 99.9 0.451 protein binding / zinc ion binding
At5g43910 22.7 99.9 0.651 pfkB-type carbohydrate kinase family protein
At4g07670 22.5 99.9 0.284 protease-associated (PA) domain-containing protein
At2g03200 21.8 99.9 0.394 aspartyl protease family protein
At3g23010 21.7 99.9 0.519 AtRLP36 (Receptor Like Protein 36)
At5g49660 21.7 99.9 0.714 leucine-rich repeat transmembrane protein kinase, putative
At2g26170 21.4 99.9 0.707 CYP711A1
At1g56320 21.0 99.9 0.389 F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P
At1g56710 20.9 99.9 0.491 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
At2g40970 20.9 99.9 0.664 myb family transcription factor
At1g49960 20.6 99.9 0.570 xanthine/uracil permease family protein
At3g30840 20.5 99.9 0.230 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g44790 20.4 99.9 0.459 UCC2 (UCLACYANIN 2)
At3g02940 20.4 99.9 0.391 MYB107 (myb domain protein 107)
At5g03510 20.1 99.9 0.238 zinc finger (C2H2 type) family protein
At1g79310 19.8 99.9 0.399 AtMC7 (metacaspase 7)
At1g61610 19.7 99.9 0.442 S-locus lectin protein kinase family protein
At4g33720 19.7 99.9 0.312 pathogenesis-related protein, putative
At1g61590 19.4 99.9 0.303 protein kinase, putative
At2g26110 19.4 99.9 0.731 F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFB
At5g05900 19.4 99.9 0.333 UDP-glucoronosyl/UDP-glucosyl transferase family protein
At5g11920 19.3 99.9 0.480 AtcwINV6 (6-&1-fructan exohydrolase)
At3g05650 19.1 99.9 0.599 AtRLP32 (Receptor Like Protein 32)
At5g18690 19.1 99.9 0.508 AGP25 (ARABINOGALACTAN PROTEINS 25)
At1g15210 18.4 99.9 0.428 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)
At2g40370 18.3 99.9 0.507 LAC5 (laccase 5)
At3g10120 18.3 99.9 0.520 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g04690 18.2 99.9 0.027 protein kinase family protein
At1g01120 17.8 99.9 0.523 KCS1 (3-KETOACYL-COA SYNTHASE 1)
At5g44920 17.6 99.9 0.442 Toll-Interleukin-Resistance (TIR) domain-containing protein
At4g17280 17.2 99.9 0.389 -
At1g71960 17.1 99.9 0.639 ABC transporter family protein
At1g17950 16.6 99.9 0.422 MYB52 (MYB DOMAIN PROTEIN 52)
At1g53990 16.6 99.9 0.493 GLIP3
At4g27280 16.4 99.9 0.485 calcium-binding EF hand family protein
At5g19410 16.3 99.9 0.342 ABC transporter family protein
At3g21550 16.0 99.9 0.537 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g21660 15.5 99.9 0.408 UBX domain-containing protein
At2g33770 15.3 99.9 0.646 PHO2 (PHOSPHATE 2)
At4g21130 15.3 99.9 0.339 EMB2271 (EMBRYO DEFECTIVE 2271)
At1g31770 15.2 99.9 0.615 ABC transporter family protein
At5g50160 15.2 99.9 0.622 FRO8 (FERRIC REDUCTION OXIDASE 8)
At1g70500 15.1 99.9 0.214 polygalacturonase, putative / pectinase, putative
At1g48000 14.7 99.9 0.663 MYB112 (myb domain protein 112)
At4g31910 14.7 99.9 0.465 transferase family protein
At4g35350 14.6 99.9 0.390 XCP1 (XYLEM CYSTEINE PEPTIDASE 1)

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 128.4 100.0 4/5 2 - - - - 83 97 111 127
GC-MS unknown 46.4 99.9 5/5 2 - - - - 117 131 85
GC-MS unknown 28.8 99.8 5/5 1 - - - - 89 217
GC-MS unknown 18.6 99.5 5/5 2 - - - - 134 184 86 281 347
GC-MS unknown 15.0 99.3 5/5 1 - - - - 87 101 144
GC-MS unknown 13.6 99.1 5/5 2 - - - - 147 129
GC-MS unknown 12.8 99.1 5/5 2 - - - - 127
GC-MS L-Phenylalanine 12.5 99.0 5/5 1 KPC00729 C00079 C9H11NO2 165.0789786 120 146 91 130 103
LC-MS unknown 46.1 99.7 1/5 1.2 - - - 544.1671 545.1749
LC-MS unknown 35.6 99.6 2/5 1.0 - - - 610.1817 611.1895
LC-MS unknown 35.4 99.6 3/5 1.1 - - - 182.0772 183.0850
LC-MS unknown 13.6 99.1 3/5 1.2 - - - 268.1348 269.1426
LC-MS unknown 8.1 98.4 1/5 1.6 - - - 273.0617 274.0695
CE-MS unknown 25.5 99.7 1/5 1.5 - - - 307 308
CE-MS unknown 24.7 99.7 2/5 2.0 - - - 84 85
CE-MS unknown 23.4 99.6 1/5 1.4 - - - 307 308
CE-MS unknown 13.0 99.2 1/5 1.5 - - - 324 323
CE-MS unknown 12.4 99.2 5/5 1.3 - - - 422 421
CE-MS unknown 12.1 99.1 1/5 1.3 - - - 351 352
CE-MS unknown 11.8 99.1 1/5 1.2 - - - 259 260
CE-MS unknown 10.5 99.0 4/5 1.4 - - - 342 341
CE-MS unknown 10.3 99.0 3/5 1.4 - - - 117 116






Back to the RnR portal site

Back to the KAGIANA project homepage