RnR The prediction of regulatory relationships associated with At5g02840

QueryAt5g02840
DescriptionLCL1 (LHY/CCA1-like 1)
RAFL IDpda01203
C.R.S
R.O.X.L.10/10 lines
P.O.X. 100.0

Jump to MassBase to obtain the original metabolomics dataset of this over-expression experiment.

Click here to show genes regulating the gene of interest.

Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At5g02840

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At5g02840 41.7 100.0 1.000 LCL1 (LHY/CCA1-like 1)
At1g35850 37.3 100.0 0.075 APUM17 (Arabidopsis Pumilio 17)
At5g40155 32.7 100.0 0.042 -
At1g52140 28.1 100.0 0.611 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g40180 26.7 99.9 0.170 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g56530 25.9 99.9 0.258 hydroxyproline-rich glycoprotein family protein
At2g31760 23.2 99.9 0.025 zinc finger protein-related
At2g43860 22.5 99.9 0.135 polygalacturonase, putative / pectinase, putative
At4g35820 20.8 99.9 0.257 oxidoreductase, 2OG-Fe(II) oxygenase family protein
At5g07420 19.4 99.9 0.081 pectinesterase family protein
At1g52240 19.2 99.9 0.085 ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11)
At2g44560 18.5 99.9 0.062 AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11)
At5g60110 17.2 99.9 0.077 APUM18 (Arabidopsis Pumilio 18)
At3g08500 16.1 99.9 0.144 MYB83 (myb domain protein 83)
At4g34510 16.1 99.9 0.090 KCS17 (3-KETOACYL-COA SYNTHASE 17)
At2g30430 15.9 99.9 0.140 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g09990 15.7 99.9 0.400 PROPEP5 (Elicitor peptide 5 precursor)
At5g25390 15.4 99.9 0.271 SHN2 (shine2)
At5g23350 15.2 99.9 0.503 GRAM domain-containing protein / ABA-responsive protein-related
At1g16760 15.0 99.9 0.128 protein kinase family protein
At5g15780 14.9 99.9 0.557 pollen Ole e 1 allergen and extensin family protein
At2g16160 14.8 99.9 0.101 transposable element gene
At3g23720 14.7 99.9 0.062 transposable element gene
At4g00300 14.7 99.9 0.667 fringe-related protein

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 57.1 99.9 3/5 1 - - - - 146
GC-MS unknown 24.7 99.7 1/5 2 - - - - 83 97 113
GC-MS unknown 23.8 99.7 5/5 2 - - - - 156
GC-MS L-Tryptophan 20.4 99.6 5/5 2 KPC00738 C00078 C11H12N2O2 204.0898776 202
GC-MS unknown 12.8 99.1 5/5 2 - - - - 117 189 147 133
GC-MS unknown 12.5 99.0 5/5 1 - - - - 85 174 154
LC-MS unknown 44.3 99.7 3/5 1.3 - - - 940.2368 941.2446
LC-MS unknown 39.4 99.7 1/5 1.3 - - - 312.1457 313.1535
LC-MS unknown 33.7 99.6 1/5 1.0 - - - 619.1483 620.1561
LC-MS unknown 29.4 99.5 1/5 1.6 - - - 622.1531 623.1609
LC-MS unknown 20.6 99.4 1/5 1.3 - - - 670.3464 671.3542
LC-MS unknown 17.9 99.3 1/5 1.7 - - - 304.0661 305.0739
LC-MS unknown 13.8 99.1 5/5 1.4 - - - 284.0909 285.0987
LC-MS unknown 13.4 99.1 3/5 1.7 - - - 679.2109 680.2187
LC-MS unknown 13.3 99.0 2/5 1.0 - - - 624.2131 625.2209
LC-MS unknown 12.9 99.0 5/5 1.3 - - - 289.0822 290.0900
LC-MS unknown 12.1 99.0 4/5 1.0 - - - 730.1832 731.1910
CE-MS unknown 48.6 99.9 1/5 2.0 - - - 123 122
CE-MS unknown 45.0 99.9 4/5 1.9 - - - 459 460
CE-MS unknown 13.7 99.3 5/5 1.1 - - - 136 135
CE-MS unknown 10.3 99.0 1/5 1.4 - - - 163 162
CE-MS unknown 9.5 98.9 5/5 1.1 - - - 137 136






Back to the RnR portal site

Back to the KAGIANA project homepage