RnR The prediction of regulatory relationships associated with At4g38620

QueryAt4g38620
DescriptionMYB4
RAFL IDpda09958
C.R.C
R.O.X.L.10/10 lines
P.O.X. 100.0

Jump to MassBase to obtain the original metabolomics dataset of this over-expression experiment.

Click here to show genes regulating the gene of interest.

Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At4g38620

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At4g38620 81.1 100.0 1.000 MYB4
At2g19300 42.5 100.0 0.135 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At5g51320 26.7 99.9 0.186 transposable element gene
At5g64620 22.2 99.9 0.474 C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)
At1g18310 22.0 99.9 0.202 glycosyl hydrolase family 81 protein
At1g29080 21.1 99.9 0.025 peptidase C1A papain family protein
At1g16950 20.0 99.9 0.148 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At4g26790 19.0 99.9 0.392 GDSL-motif lipase/hydrolase family protein
At1g54120 18.5 99.9 0.499 F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At1g27620 16.7 99.9 0.533 transferase family protein
At2g43620 16.5 99.9 0.219 chitinase, putative
At2g47120 16.3 99.9 0.113 short-chain dehydrogenase/reductase (SDR) family protein
At2g39850 16.2 99.9 0.337 identical protein binding / serine-type endopeptidase
At3g11550 16.1 99.9 0.501 integral membrane family protein
At4g22510 15.5 99.9 0.195 F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 58.6 99.9 3/5 1 - - - - 160 144 132 103
GC-MS unknown 31.9 99.8 3/5 1 - - - - 116 147
GC-MS unknown 16.0 99.4 5/5 2 - - - - 92
GC-MS unknown 15.6 99.3 3/5 2 - - - - 89 175
GC-MS unknown 10.6 98.7 5/5 1 - - - - 147 103 192 217 361
LC-MS unknown 15.0 99.2 5/5 1.3 - - - 181.1875 182.1953
LC-MS unknown 12.2 99.0 1/5 1.5 - - - 138.0319 139.0397
LC-MS unknown 10.7 98.8 2/5 1.6 - - - 622.1531 623.1609
LC-MS unknown 8.9 98.5 1/5 1.4 - - - 264.1025 265.1103
LC-MS unknown 6.3 97.9 1/5 1.6 - - - 297.1204 298.1282
CE-MS 4-Aminobutyric acid 27.3 99.7 5/5 1.3 KPC00193 C00334 C4H9NO2 103.0633285 102
CE-MS unknown 26.9 99.7 1/5 1.5 - - - 347 348
CE-MS unknown 16.3 99.4 1/5 1.0 - - - 322 321
CE-MS unknown 15.9 99.4 2/5 1.8 - - - 88 87
CE-MS unknown 11.5 99.1 1/5 1.9 - - - 89 90
CE-MS unknown 11.3 99.1 1/5 1.3 - - - 149 148
CE-MS unknown 11.1 99.0 1/5 2.0 - - - 123 122
CE-MS unknown 11.1 99.0 1/5 1.7 - - - 221 220
CE-MS unknown 10.5 99.0 1/5 1.6 - - - 309 310






Back to the RnR portal site

Back to the KAGIANA project homepage