RnR: Regulatory-network Research using Arabidopsis T87 cultured cells

The prediction of regulatory relationships associated with At4g34410

Query At4g34410

Description RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)

RAFL ID pda05584

C.R. C

R.O.X.L. 6/12 lines

P.O.X. 100.0

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Maroon over-expressed gene

Orange gene

Yellow metabolite, lipid mode, GC-MS

Cyan metabolite, polar mode, GC-MS

Blue metabolite, LC-MS

Green metabolite, negative mode, CE-MS

Limegreen metabolite, positive mode, CE-MS

Candidate elements regulated by At4g34410

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias

At1g43160 213.6 100.0 0.313 RAP2.6 (related to AP2 6)

At4g34410 213.4 100.0 1.000 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)

At1g10585 200.8 100.0 0.066 transcription factor

At1g25230 182.3 100.0 0.110 purple acid phosphatase family protein

At5g15830 159.7 100.0 0.150 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)

At1g74080 159.2 100.0 0.241 MYB122 (MYB DOMAIN PROTEIN 122)

At1g61930 156.3 100.0 0.134 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At4g25434 148.0 100.0 0.185 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)

At4g25410 122.6 100.0 0.231 DNA binding / transcription factor

At3g48520 111.1 100.0 0.337 CYP94B3

At5g25620 99.8 100.0 0.114 YUC6 (YUCCA6)

At4g37250 99.5 100.0 0.368 leucine-rich repeat family protein / protein kinase family protein

At5g19890 90.8 100.0 0.052 peroxidase, putative

At1g77450 89.9 100.0 0.505 anac032 (Arabidopsis NAC domain containing protein 32)

At1g47960 88.6 100.0 0.148 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)

At2g27370 85.2 100.0 0.216 integral membrane family protein

At2g47950 84.9 100.0 0.372 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P

At4g30230 82.5 100.0 0.111 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At3g14680 82.3 100.0 0.123 CYP72A14

At5g52670 76.5 100.0 0.308 heavy-metal-associated domain-containing protein

At3g10120 73.5 100.0 0.158 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At1g49750 69.9 100.0 0.082 leucine-rich repeat family protein

At2g36120 69.0 100.0 0.141 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)

At3g11280 63.2 100.0 0.197 myb family transcription factor

At5g64530 62.1 100.0 0.210 XND1

At1g80840 61.7 100.0 0.866 WRKY40

At3g47380 61.4 100.0 0.118 invertase/pectin methylesterase inhibitor family protein

At1g68570 61.1 100.0 0.081 proton-dependent oligopeptide transport (POT) family protein

At1g01070 56.6 100.0 0.200 nodulin MtN21 family protein

At5g52050 56.0 100.0 0.787 MATE efflux protein-related

At1g76040 55.0 100.0 0.420 CPK29

At1g04490 54.8 100.0 0.377 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At1g77020 54.7 100.0 0.293 DNAJ heat shock N-terminal domain-containing protein

At3g13650 54.1 100.0 0.238 disease resistance response

At4g25790 53.8 100.0 0.072 allergen V5/Tpx-1-related family protein

At2g22860 51.2 100.0 0.450 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)

At1g59740 50.1 100.0 0.357 proton-dependent oligopeptide transport (POT) family protein

At4g21960 49.8 100.0 0.188 PRXR1

At1g69150 48.9 100.0 0.187 DC1 domain-containing protein

At2g32160 47.5 100.0 0.079 -

At1g63040 47.4 100.0 0.106 -

At3g01350 47.3 100.0 0.161 proton-dependent oligopeptide transport (POT) family protein

At4g24060 47.1 100.0 0.256 Dof-type zinc finger domain-containing protein

At5g52720 46.5 100.0 0.222 metal ion binding

At1g73330 45.0 100.0 0.182 ATDR4

At4g34600 45.0 100.0 0.138 F:molecular_function unknown;P:unknown;C:endomembrane system;P

At1g66140 43.4 100.0 0.188 ZFP4 (ZINC FINGER PROTEIN 4)

At1g25530 42.7 100.0 0.195 lysine and histidine specific transporter, putative

At5g07030 42.5 100.0 0.086 aspartic-type endopeptidase

At3g52770 41.4 100.0 0.045 ZPR3 (LITTLE ZIPPER 3)

At5g61290 39.8 100.0 0.109 flavin-containing monooxygenase family protein / FMO family protein

At2g26170 39.6 100.0 0.318 CYP711A1

At4g31730 39.3 100.0 0.156 GDU1 (GLUTAMINE DUMPER 1)

At5g13320 39.2 100.0 0.378 PBS3 (AVRPPHB SUSCEPTIBLE 3)

At1g19630 38.3 100.0 0.108 CYP722A1

At3g47040 38.2 100.0 0.207 glycosyl hydrolase family 3 protein

At2g40460 38.1 100.0 0.132 proton-dependent oligopeptide transport (POT) family protein

At3g20830 37.7 100.0 0.260 protein kinase family protein

At1g13600 37.6 100.0 0.197 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)

At4g38690 34.9 100.0 0.077 1-phosphatidylinositol phosphodiesterase-related

At5g46910 34.9 100.0 0.371 transcription factor jumonji (jmj) family protein

At3g61430 33.3 100.0 0.177 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)

At4g19720 33.0 100.0 0.310 glycosyl hydrolase family 18 protein

At3g51895 32.4 100.0 0.110 SULTR3

At5g52760 32.3 100.0 0.642 heavy-metal-associated domain-containing protein

At2g44300 31.1 100.0 0.248 lipid transfer protein-related

At4g35480 30.9 100.0 0.409 RHA3B

At1g80050 30.7 100.0 0.140 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)

At1g55740 30.4 100.0 0.241 AtSIP1 (Arabidopsis thaliana seed imbibition 1)

At1g21525 30.2 100.0 0.148 -

At3g23290 30.2 100.0 0.077 -

At2g37170 30.1 100.0 0.190 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)

At4g32860 29.9 100.0 0.080 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At1g02460 29.8 100.0 0.236 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

At4g14010 29.8 100.0 0.156 RALFL32 (ralf-like 32)

At5g52710 29.5 100.0 0.324 heavy-metal-associated domain-containing protein

At3g54390 29.0 100.0 0.144 transcription factor

At5g52690 28.9 100.0 0.330 heavy-metal-associated domain-containing protein

At4g17340 28.7 100.0 0.140 TIP2

At2g18210 28.6 100.0 0.393 F:molecular_function unknown;P:biological_process unknown;C:unknown;P

At3g12920 28.6 100.0 0.278 protein binding / zinc ion binding

At1g66780 28.5 100.0 0.194 MATE efflux family protein

At1g71880 28.4 100.0 0.234 SUC1 (Sucrose-proton symporter 1)

At4g02780 28.4 100.0 0.153 GA1 (GA REQUIRING 1)

At3g23110 28.3 100.0 0.110 AtRLP37 (Receptor Like Protein 37)

At4g13810 27.7 100.0 0.138 AtRLP47 (Receptor Like Protein 47)

At3g63110 27.5 100.0 0.210 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)

At3g02110 27.0 99.9 0.085 scpl25 (serine carboxypeptidase-like 25)

At5g50160 26.8 99.9 0.132 FRO8 (FERRIC REDUCTION OXIDASE 8)

At1g66970 26.7 99.9 0.082 SVL2 (SHV3-LIKE 2)

At1g70560 26.4 99.9 0.201 TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)

At3g54400 26.3 99.9 0.129 aspartyl protease family protein

At2g18560 26.0 99.9 0.186 UDP-glucoronosyl/UDP-glucosyl transferase family protein

At4g37580 26.0 99.9 0.082 HLS1 (HOOKLESS 1)

At3g47540 25.6 99.9 0.124 chitinase, putative

At1g01420 25.3 99.9 0.092 UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)

At2g29660 25.1 99.9 0.177 zinc finger (C2H2 type) family protein

At1g61820 24.6 99.9 0.391 BGLU46 (BETA GLUCOSIDASE 46)

At5g42500 24.4 99.9 0.077 disease resistance-responsive family protein

At3g04570 24.1 99.9 0.175 DNA-binding protein-related

At5g52680 24.1 99.9 0.328 heavy-metal-associated domain-containing protein

At1g70690 24.0 99.9 0.125 HWI1 (HOPW1-1-INDUCED GENE1)

At4g32780 24.0 99.9 0.147 phosphoinositide binding

At3g61490 23.8 99.9 0.162 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

At1g57943 23.7 99.9 0.279 ATPUP17

At1g70370 23.7 99.9 0.123 BURP domain-containing protein / polygalacturonase, putative

At1g29480 23.4 99.9 0.042 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP

At1g58300 23.2 99.9 0.176 ho4 (HEME OXYGENASE 4)

At2g38640 23.2 99.9 0.217 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF

At3g47510 23.1 99.9 0.253 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P

At5g53710 23.0 99.9 0.134 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P

At1g13970 22.9 99.9 0.014 F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;POFM

At2g38240 22.9 99.9 0.440 oxidoreductase, 2OG-Fe(II) oxygenase family protein

At4g14020 22.0 99.9 0.115 rapid alkalinization factor (RALF) family protein

At2g36830 21.2 99.9 0.158 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)

At3g53960 21.2 99.9 0.223 proton-dependent oligopeptide transport (POT) family protein

At4g39410 21.0 99.9 0.186 WRKY13

At5g51890 21.0 99.9 0.271 peroxidase

At4g36830 20.9 99.9 0.266 GNS1/SUR4 membrane family protein

At3g50980 20.7 99.9 0.021 XERO1 (DEHYDRIN XERO 1)

At3g12090 20.6 99.9 0.316 TET6 (TETRASPANIN6)

At5g62680 20.4 99.9 0.259 proton-dependent oligopeptide transport (POT) family protein

At5g52750 20.1 99.9 0.487 heavy-metal-associated domain-containing protein

At1g32100 19.8 99.9 0.319 PRR1 (PINORESINOL REDUCTASE 1)

At4g24120 19.7 99.9 0.144 YSL1 (YELLOW STRIPE LIKE 1)

At2g21900 19.4 99.9 0.571 WRKY59

At3g52480 19.4 99.9 0.134 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P

At3g12220 19.3 99.9 0.160 scpl16 (serine carboxypeptidase-like 16)

At2g21550 19.2 99.9 0.257 bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative

At4g33040 19.1 99.9 0.172 glutaredoxin family protein

At5g46730 19.1 99.9 0.168 glycine-rich protein

At3g59930 19.0 99.9 0.089 -

At2g27690 18.8 99.9 0.399 CYP94C1

At1g24320 18.7 99.9 0.244 alpha-glucosidase, putative

At1g80520 18.6 99.9 0.242 -

At3g28210 18.4 99.9 0.219 PMZ

At2g01670 18.3 99.9 0.195 atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)

At4g11890 18.1 99.9 0.178 protein kinase family protein

At5g10760 17.8 99.9 0.054 aspartyl protease family protein

At1g21100 17.1 99.9 0.118 O-methyltransferase, putative

At2g34740 17.1 99.9 0.022 catalytic/ protein serine/threonine phosphatase

At3g13090 17.1 99.9 0.440 ATMRP8

At3g55970 17.1 99.9 0.243 oxidoreductase, 2OG-Fe(II) oxygenase family protein

At5g47850 17.1 99.9 0.577 CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)

At1g31770 16.7 99.9 0.183 ABC transporter family protein

At3g12460 16.7 99.9 0.149 3'-5' exonuclease/ nucleic acid binding

At5g66640 16.6 99.9 0.676 DAR3 (DA1-RELATED PROTEIN 3)

At1g33700 15.9 99.9 0.164 catalytic/ glucosylceramidase

At1g71890 15.9 99.9 0.079 SUC5

At5g51950 15.9 99.9 0.019 glucose-methanol-choline (GMC) oxidoreductase family protein

At1g33240 15.8 99.9 0.147 AT-GTL1 (GT2-LIKE 1)

At2g41480 15.8 99.9 0.123 electron carrier/ heme binding / peroxidase

At1g29450 15.7 99.9 0.052 auxin-responsive protein, putative

At4g11900 15.7 99.9 0.105 S-locus lectin protein kinase family protein

At3g23190 15.6 99.9 0.204 lesion inducing protein-related

At4g32880 15.5 99.9 0.245 ATHB-8 (HOMEOBOX GENE 8)

At5g25890 15.5 99.9 0.233 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)

At1g17600 15.4 99.9 0.236 disease resistance protein (TIR-NBS-LRR class), putative

At3g43250 15.4 99.9 0.209 cell cycle control protein-related

At5g38980 15.4 99.9 0.089 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P

At4g03010 15.3 99.9 0.104 leucine-rich repeat family protein

At1g29195 15.2 99.9 0.168 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P

At3g27510 15.2 99.9 0.092 protein binding / zinc ion binding

At4g08780 15.2 99.9 0.173 peroxidase, putative

At1g47980 15.1 99.9 0.024 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB

At2g17710 15.1 99.9 0.123 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At3g18960 15.1 99.9 0.081 transcriptional factor B3 family protein

At4g25090 15.1 99.9 0.111 respiratory burst oxidase, putative / NADPH oxidase, putative

At1g63180 15.0 99.9 0.148 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)

At3g23295 14.8 99.9 0.103 -

At5g61660 14.8 99.9 0.091 glycine-rich protein

At2g15020 14.7 99.9 0.050 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

At2g15090 14.7 99.9 0.073 KCS8 (3-KETOACYL-COA SYNTHASE 8)

At2g43910 14.7 99.9 0.139 thiol methyltransferase, putative

At5g06610 14.6 99.9 0.230 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB

Regulated gene	Std.R.	P.R.	Co-X	Gene name/alias
At1g43160	213.6	100.0	0.313	RAP2.6 (related to AP2 6)
At4g34410	213.4	100.0	1.000	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)
At1g10585	200.8	100.0	0.066	transcription factor
At1g25230	182.3	100.0	0.110	purple acid phosphatase family protein
At5g15830	159.7	100.0	0.150	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)
At1g74080	159.2	100.0	0.241	MYB122 (MYB DOMAIN PROTEIN 122)
At1g61930	156.3	100.0	0.134	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At4g25434	148.0	100.0	0.185	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)
At4g25410	122.6	100.0	0.231	DNA binding / transcription factor
At3g48520	111.1	100.0	0.337	CYP94B3
At5g25620	99.8	100.0	0.114	YUC6 (YUCCA6)
At4g37250	99.5	100.0	0.368	leucine-rich repeat family protein / protein kinase family protein
At5g19890	90.8	100.0	0.052	peroxidase, putative
At1g77450	89.9	100.0	0.505	anac032 (Arabidopsis NAC domain containing protein 32)
At1g47960	88.6	100.0	0.148	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)
At2g27370	85.2	100.0	0.216	integral membrane family protein
At2g47950	84.9	100.0	0.372	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At4g30230	82.5	100.0	0.111	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g14680	82.3	100.0	0.123	CYP72A14
At5g52670	76.5	100.0	0.308	heavy-metal-associated domain-containing protein
At3g10120	73.5	100.0	0.158	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g49750	69.9	100.0	0.082	leucine-rich repeat family protein
At2g36120	69.0	100.0	0.141	DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)
At3g11280	63.2	100.0	0.197	myb family transcription factor
At5g64530	62.1	100.0	0.210	XND1
At1g80840	61.7	100.0	0.866	WRKY40
At3g47380	61.4	100.0	0.118	invertase/pectin methylesterase inhibitor family protein
At1g68570	61.1	100.0	0.081	proton-dependent oligopeptide transport (POT) family protein
At1g01070	56.6	100.0	0.200	nodulin MtN21 family protein
At5g52050	56.0	100.0	0.787	MATE efflux protein-related
At1g76040	55.0	100.0	0.420	CPK29
At1g04490	54.8	100.0	0.377	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g77020	54.7	100.0	0.293	DNAJ heat shock N-terminal domain-containing protein
At3g13650	54.1	100.0	0.238	disease resistance response
At4g25790	53.8	100.0	0.072	allergen V5/Tpx-1-related family protein
At2g22860	51.2	100.0	0.450	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)
At1g59740	50.1	100.0	0.357	proton-dependent oligopeptide transport (POT) family protein
At4g21960	49.8	100.0	0.188	PRXR1
At1g69150	48.9	100.0	0.187	DC1 domain-containing protein
At2g32160	47.5	100.0	0.079	-
At1g63040	47.4	100.0	0.106	-
At3g01350	47.3	100.0	0.161	proton-dependent oligopeptide transport (POT) family protein
At4g24060	47.1	100.0	0.256	Dof-type zinc finger domain-containing protein
At5g52720	46.5	100.0	0.222	metal ion binding
At1g73330	45.0	100.0	0.182	ATDR4
At4g34600	45.0	100.0	0.138	F:molecular_function unknown;P:unknown;C:endomembrane system;P
At1g66140	43.4	100.0	0.188	ZFP4 (ZINC FINGER PROTEIN 4)
At1g25530	42.7	100.0	0.195	lysine and histidine specific transporter, putative
At5g07030	42.5	100.0	0.086	aspartic-type endopeptidase
At3g52770	41.4	100.0	0.045	ZPR3 (LITTLE ZIPPER 3)
At5g61290	39.8	100.0	0.109	flavin-containing monooxygenase family protein / FMO family protein
At2g26170	39.6	100.0	0.318	CYP711A1
At4g31730	39.3	100.0	0.156	GDU1 (GLUTAMINE DUMPER 1)
At5g13320	39.2	100.0	0.378	PBS3 (AVRPPHB SUSCEPTIBLE 3)
At1g19630	38.3	100.0	0.108	CYP722A1
At3g47040	38.2	100.0	0.207	glycosyl hydrolase family 3 protein
At2g40460	38.1	100.0	0.132	proton-dependent oligopeptide transport (POT) family protein
At3g20830	37.7	100.0	0.260	protein kinase family protein
At1g13600	37.6	100.0	0.197	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)
At4g38690	34.9	100.0	0.077	1-phosphatidylinositol phosphodiesterase-related
At5g46910	34.9	100.0	0.371	transcription factor jumonji (jmj) family protein
At3g61430	33.3	100.0	0.177	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)
At4g19720	33.0	100.0	0.310	glycosyl hydrolase family 18 protein
At3g51895	32.4	100.0	0.110	SULTR3
At5g52760	32.3	100.0	0.642	heavy-metal-associated domain-containing protein
At2g44300	31.1	100.0	0.248	lipid transfer protein-related
At4g35480	30.9	100.0	0.409	RHA3B
At1g80050	30.7	100.0	0.140	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)
At1g55740	30.4	100.0	0.241	AtSIP1 (Arabidopsis thaliana seed imbibition 1)
At1g21525	30.2	100.0	0.148	-
At3g23290	30.2	100.0	0.077	-
At2g37170	30.1	100.0	0.190	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)
At4g32860	29.9	100.0	0.080	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g02460	29.8	100.0	0.236	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
At4g14010	29.8	100.0	0.156	RALFL32 (ralf-like 32)
At5g52710	29.5	100.0	0.324	heavy-metal-associated domain-containing protein
At3g54390	29.0	100.0	0.144	transcription factor
At5g52690	28.9	100.0	0.330	heavy-metal-associated domain-containing protein
At4g17340	28.7	100.0	0.140	TIP2
At2g18210	28.6	100.0	0.393	F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At3g12920	28.6	100.0	0.278	protein binding / zinc ion binding
At1g66780	28.5	100.0	0.194	MATE efflux family protein
At1g71880	28.4	100.0	0.234	SUC1 (Sucrose-proton symporter 1)
At4g02780	28.4	100.0	0.153	GA1 (GA REQUIRING 1)
At3g23110	28.3	100.0	0.110	AtRLP37 (Receptor Like Protein 37)
At4g13810	27.7	100.0	0.138	AtRLP47 (Receptor Like Protein 47)
At3g63110	27.5	100.0	0.210	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)
At3g02110	27.0	99.9	0.085	scpl25 (serine carboxypeptidase-like 25)
At5g50160	26.8	99.9	0.132	FRO8 (FERRIC REDUCTION OXIDASE 8)
At1g66970	26.7	99.9	0.082	SVL2 (SHV3-LIKE 2)
At1g70560	26.4	99.9	0.201	TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)
At3g54400	26.3	99.9	0.129	aspartyl protease family protein
At2g18560	26.0	99.9	0.186	UDP-glucoronosyl/UDP-glucosyl transferase family protein
At4g37580	26.0	99.9	0.082	HLS1 (HOOKLESS 1)
At3g47540	25.6	99.9	0.124	chitinase, putative
At1g01420	25.3	99.9	0.092	UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)
At2g29660	25.1	99.9	0.177	zinc finger (C2H2 type) family protein
At1g61820	24.6	99.9	0.391	BGLU46 (BETA GLUCOSIDASE 46)
At5g42500	24.4	99.9	0.077	disease resistance-responsive family protein
At3g04570	24.1	99.9	0.175	DNA-binding protein-related
At5g52680	24.1	99.9	0.328	heavy-metal-associated domain-containing protein
At1g70690	24.0	99.9	0.125	HWI1 (HOPW1-1-INDUCED GENE1)
At4g32780	24.0	99.9	0.147	phosphoinositide binding
At3g61490	23.8	99.9	0.162	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
At1g57943	23.7	99.9	0.279	ATPUP17
At1g70370	23.7	99.9	0.123	BURP domain-containing protein / polygalacturonase, putative
At1g29480	23.4	99.9	0.042	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP
At1g58300	23.2	99.9	0.176	ho4 (HEME OXYGENASE 4)
At2g38640	23.2	99.9	0.217	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF
At3g47510	23.1	99.9	0.253	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At5g53710	23.0	99.9	0.134	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At1g13970	22.9	99.9	0.014	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;POFM
At2g38240	22.9	99.9	0.440	oxidoreductase, 2OG-Fe(II) oxygenase family protein
At4g14020	22.0	99.9	0.115	rapid alkalinization factor (RALF) family protein
At2g36830	21.2	99.9	0.158	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)
At3g53960	21.2	99.9	0.223	proton-dependent oligopeptide transport (POT) family protein
At4g39410	21.0	99.9	0.186	WRKY13
At5g51890	21.0	99.9	0.271	peroxidase
At4g36830	20.9	99.9	0.266	GNS1/SUR4 membrane family protein
At3g50980	20.7	99.9	0.021	XERO1 (DEHYDRIN XERO 1)
At3g12090	20.6	99.9	0.316	TET6 (TETRASPANIN6)
At5g62680	20.4	99.9	0.259	proton-dependent oligopeptide transport (POT) family protein
At5g52750	20.1	99.9	0.487	heavy-metal-associated domain-containing protein
At1g32100	19.8	99.9	0.319	PRR1 (PINORESINOL REDUCTASE 1)
At4g24120	19.7	99.9	0.144	YSL1 (YELLOW STRIPE LIKE 1)
At2g21900	19.4	99.9	0.571	WRKY59
At3g52480	19.4	99.9	0.134	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At3g12220	19.3	99.9	0.160	scpl16 (serine carboxypeptidase-like 16)
At2g21550	19.2	99.9	0.257	bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative
At4g33040	19.1	99.9	0.172	glutaredoxin family protein
At5g46730	19.1	99.9	0.168	glycine-rich protein
At3g59930	19.0	99.9	0.089	-
At2g27690	18.8	99.9	0.399	CYP94C1
At1g24320	18.7	99.9	0.244	alpha-glucosidase, putative
At1g80520	18.6	99.9	0.242	-
At3g28210	18.4	99.9	0.219	PMZ
At2g01670	18.3	99.9	0.195	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)
At4g11890	18.1	99.9	0.178	protein kinase family protein
At5g10760	17.8	99.9	0.054	aspartyl protease family protein
At1g21100	17.1	99.9	0.118	O-methyltransferase, putative
At2g34740	17.1	99.9	0.022	catalytic/ protein serine/threonine phosphatase
At3g13090	17.1	99.9	0.440	ATMRP8
At3g55970	17.1	99.9	0.243	oxidoreductase, 2OG-Fe(II) oxygenase family protein
At5g47850	17.1	99.9	0.577	CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)
At1g31770	16.7	99.9	0.183	ABC transporter family protein
At3g12460	16.7	99.9	0.149	3'-5' exonuclease/ nucleic acid binding
At5g66640	16.6	99.9	0.676	DAR3 (DA1-RELATED PROTEIN 3)
At1g33700	15.9	99.9	0.164	catalytic/ glucosylceramidase
At1g71890	15.9	99.9	0.079	SUC5
At5g51950	15.9	99.9	0.019	glucose-methanol-choline (GMC) oxidoreductase family protein
At1g33240	15.8	99.9	0.147	AT-GTL1 (GT2-LIKE 1)
At2g41480	15.8	99.9	0.123	electron carrier/ heme binding / peroxidase
At1g29450	15.7	99.9	0.052	auxin-responsive protein, putative
At4g11900	15.7	99.9	0.105	S-locus lectin protein kinase family protein
At3g23190	15.6	99.9	0.204	lesion inducing protein-related
At4g32880	15.5	99.9	0.245	ATHB-8 (HOMEOBOX GENE 8)
At5g25890	15.5	99.9	0.233	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)
At1g17600	15.4	99.9	0.236	disease resistance protein (TIR-NBS-LRR class), putative
At3g43250	15.4	99.9	0.209	cell cycle control protein-related
At5g38980	15.4	99.9	0.089	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At4g03010	15.3	99.9	0.104	leucine-rich repeat family protein
At1g29195	15.2	99.9	0.168	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P
At3g27510	15.2	99.9	0.092	protein binding / zinc ion binding
At4g08780	15.2	99.9	0.173	peroxidase, putative
At1g47980	15.1	99.9	0.024	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB
At2g17710	15.1	99.9	0.123	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g18960	15.1	99.9	0.081	transcriptional factor B3 family protein
At4g25090	15.1	99.9	0.111	respiratory burst oxidase, putative / NADPH oxidase, putative
At1g63180	15.0	99.9	0.148	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)
At3g23295	14.8	99.9	0.103	-
At5g61660	14.8	99.9	0.091	glycine-rich protein
At2g15020	14.7	99.9	0.050	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g15090	14.7	99.9	0.073	KCS8 (3-KETOACYL-COA SYNTHASE 8)
At2g43910	14.7	99.9	0.139	thiol methyltransferase, putative
At5g06610	14.6	99.9	0.230	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB

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Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass

GC-MS unknown 89.0 100.0 5/5 1 - - - - 147 103 259 217 129
GC-MS unknown 66.4 99.9 5/5 1 - - - -
GC-MS unknown 42.7 99.9 5/5 1 - - - - 147 103 192 217 361
GC-MS L-Leucine 36.1 99.8 5/5 2 KPC00715 C00123 C6H13NO2 131.0946287 158 102 147
GC-MS Malonic acid 32.4 99.8 5/5 1 KPC01447 C00383 C3H4O4 104.0109586 147
GC-MS unknown 29.7 99.8 5/5 2 - - - - 147 217 129 103 361
GC-MS unknown 23.4 99.7 5/5 1 - - - - 156 117
GC-MS unknown 22.7 99.7 5/5 1 - - - - 147 103 129 217 294 361
GC-MS unknown 20.4 99.6 5/5 1 - - - -
GC-MS unknown 20.2 99.6 5/5 2 - - - - 117 85 129
GC-MS N-Acetyl-D-glucosamine 16.9 99.4 5/5 1 KPC01449 C00140 C8H15NO6 221.0899372 147 87 129 103 202 319
GC-MS unknown 16.1 99.4 5/5 2 - - - - 147 217 284 103 129
GC-MS unknown 15.2 99.3 5/5 2 - - - - 147 103 129 361 169
GC-MS L-Proline 2TMS 15.0 99.3 5/5 1 KPC00732 C00148 C5H9NO2 115.0633285 142
GC-MS unknown 12.1 99.0 5/5 1 - - - - 87 100
LC-MS unknown 139.6 99.9 3/5 1.1 - - - 627.1903 628.1981
LC-MS unknown 119.9 99.8 1/5 1.0 - - - 608.1581 609.1659
LC-MS unknown 78.5 99.8 3/5 1.5 - - - 438.0890 439.0968
LC-MS unknown 70.4 99.8 2/5 1.1 - - - 595.2080 596.2158
LC-MS unknown 70.0 99.8 1/5 1.2 - - - 597.1799 598.1877
LC-MS unknown 65.5 99.8 4/5 1.4 - - - 468.1438 469.1516
LC-MS unknown 64.2 99.8 4/5 1.5 - - - 594.1224 595.1302
LC-MS unknown 57.5 99.7 1/5 1.5 - - - 716.2952 717.3030
LC-MS unknown 45.5 99.7 3/5 1.1 - - - 382.1096 383.1174
LC-MS unknown 43.0 99.7 1/5 2.1 - - - 1062.3909 1063.3987
LC-MS unknown 35.5 99.6 2/5 1.4 - - - 293.0919 294.0997
LC-MS unknown 31.1 99.6 3/5 1.1 - - - 543.1720 544.1798
LC-MS unknown 30.8 99.6 5/5 1.3 - - - 643.2378 644.2456
LC-MS unknown 27.2 99.5 1/5 1.4 - - - 520.2025 521.2103
LC-MS unknown 26.0 99.5 4/5 1.1 - - - 546.2043 547.2121
LC-MS unknown 25.3 99.5 2/5 1.3 - - - 760.2889 761.2967
LC-MS Kaempferol-hexose-maltose-6-deoxyhexose 23.7 99.5 1/5 1.9 C39H50O25 918.2641172 681.2686
LC-MS unknown 22.8 99.4 5/5 1.1 - - - 398.1673 399.1751
LC-MS unknown 21.7 99.4 2/5 1.4 - - - 742.2683 743.2761
LC-MS unknown 21.4 99.4 5/5 1.0 - - - 546.2033 547.2111
LC-MS unknown 19.7 99.4 1/5 1.6 - - - 720.2517 721.2595
LC-MS unknown 19.4 99.4 3/5 1.5 - - - 654.1543 655.1621
LC-MS unknown 18.6 99.3 2/5 1.6 - - - 315.0743 316.0821
LC-MS unknown 18.4 99.3 2/5 1.0 - - - 542.1897 543.1975
LC-MS unknown 17.7 99.3 1/5 1.7 - - - 628.1930 629.2008
LC-MS unknown 15.7 99.2 4/5 1.2 - - - 544.1671 545.1749
LC-MS unknown 15.5 99.2 5/5 1.7 - - - 338.0621 339.0699
LC-MS unknown 15.4 99.2 1/5 2.0 - - - 1064.4035 1065.4113
LC-MS unknown 14.8 99.2 2/5 1.8 - - - 334.1067 335.1145
LC-MS unknown 14.5 99.1 4/5 1.3 - - - 803.3213 804.3291
LC-MS unknown 14.3 99.1 1/5 2.4 - - - 1002.3676 1003.3754
LC-MS unknown 12.8 99.0 5/5 1.5 - - - 290.0825 291.0903

Inst. Type	Regulated metabolite	Std.R.	P.R.	D.F.	D.R.	KaPPA-View	KEGG	Formula	Mass	Measured mass
GC-MS	unknown	89.0	100.0	5/5	1	-	-	-	-	147 103 259 217 129
GC-MS	unknown	66.4	99.9	5/5	1	-	-	-	-
GC-MS	unknown	42.7	99.9	5/5	1	-	-	-	-	147 103 192 217 361
GC-MS	L-Leucine	36.1	99.8	5/5	2	KPC00715	C00123	C6H13NO2	131.0946287	158 102 147
GC-MS	Malonic acid	32.4	99.8	5/5	1	KPC01447	C00383	C3H4O4	104.0109586	147
GC-MS	unknown	29.7	99.8	5/5	2	-	-	-	-	147 217 129 103 361
GC-MS	unknown	23.4	99.7	5/5	1	-	-	-	-	156 117
GC-MS	unknown	22.7	99.7	5/5	1	-	-	-	-	147 103 129 217 294 361
GC-MS	unknown	20.4	99.6	5/5	1	-	-	-	-
GC-MS	unknown	20.2	99.6	5/5	2	-	-	-	-	117 85 129
GC-MS	N-Acetyl-D-glucosamine	16.9	99.4	5/5	1	KPC01449	C00140	C8H15NO6	221.0899372	147 87 129 103 202 319
GC-MS	unknown	16.1	99.4	5/5	2	-	-	-	-	147 217 284 103 129
GC-MS	unknown	15.2	99.3	5/5	2	-	-	-	-	147 103 129 361 169
GC-MS	L-Proline 2TMS	15.0	99.3	5/5	1	KPC00732	C00148	C5H9NO2	115.0633285	142
GC-MS	unknown	12.1	99.0	5/5	1	-	-	-	-	87 100
LC-MS	unknown	139.6	99.9	3/5	1.1	-	-	-	627.1903	628.1981
LC-MS	unknown	119.9	99.8	1/5	1.0	-	-	-	608.1581	609.1659
LC-MS	unknown	78.5	99.8	3/5	1.5	-	-	-	438.0890	439.0968
LC-MS	unknown	70.4	99.8	2/5	1.1	-	-	-	595.2080	596.2158
LC-MS	unknown	70.0	99.8	1/5	1.2	-	-	-	597.1799	598.1877
LC-MS	unknown	65.5	99.8	4/5	1.4	-	-	-	468.1438	469.1516
LC-MS	unknown	64.2	99.8	4/5	1.5	-	-	-	594.1224	595.1302
LC-MS	unknown	57.5	99.7	1/5	1.5	-	-	-	716.2952	717.3030
LC-MS	unknown	45.5	99.7	3/5	1.1	-	-	-	382.1096	383.1174
LC-MS	unknown	43.0	99.7	1/5	2.1	-	-	-	1062.3909	1063.3987
LC-MS	unknown	35.5	99.6	2/5	1.4	-	-	-	293.0919	294.0997
LC-MS	unknown	31.1	99.6	3/5	1.1	-	-	-	543.1720	544.1798
LC-MS	unknown	30.8	99.6	5/5	1.3	-	-	-	643.2378	644.2456
LC-MS	unknown	27.2	99.5	1/5	1.4	-	-	-	520.2025	521.2103
LC-MS	unknown	26.0	99.5	4/5	1.1	-	-	-	546.2043	547.2121
LC-MS	unknown	25.3	99.5	2/5	1.3	-	-	-	760.2889	761.2967
LC-MS	Kaempferol-hexose-maltose-6-deoxyhexose	23.7	99.5	1/5	1.9			C39H50O25	918.2641172	681.2686
LC-MS	unknown	22.8	99.4	5/5	1.1	-	-	-	398.1673	399.1751
LC-MS	unknown	21.7	99.4	2/5	1.4	-	-	-	742.2683	743.2761
LC-MS	unknown	21.4	99.4	5/5	1.0	-	-	-	546.2033	547.2111
LC-MS	unknown	19.7	99.4	1/5	1.6	-	-	-	720.2517	721.2595
LC-MS	unknown	19.4	99.4	3/5	1.5	-	-	-	654.1543	655.1621
LC-MS	unknown	18.6	99.3	2/5	1.6	-	-	-	315.0743	316.0821
LC-MS	unknown	18.4	99.3	2/5	1.0	-	-	-	542.1897	543.1975
LC-MS	unknown	17.7	99.3	1/5	1.7	-	-	-	628.1930	629.2008
LC-MS	unknown	15.7	99.2	4/5	1.2	-	-	-	544.1671	545.1749
LC-MS	unknown	15.5	99.2	5/5	1.7	-	-	-	338.0621	339.0699
LC-MS	unknown	15.4	99.2	1/5	2.0	-	-	-	1064.4035	1065.4113
LC-MS	unknown	14.8	99.2	2/5	1.8	-	-	-	334.1067	335.1145
LC-MS	unknown	14.5	99.1	4/5	1.3	-	-	-	803.3213	804.3291
LC-MS	unknown	14.3	99.1	1/5	2.4	-	-	-	1002.3676	1003.3754
LC-MS	unknown	12.8	99.0	5/5	1.5	-	-	-	290.0825	291.0903

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Genes

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Query	At4g34410
Description	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)
RAFL ID	pda05584
C.R.	C
R.O.X.L.	6/12 lines
P.O.X.	100.0

Maroon	over-expressed gene
Orange	gene
Yellow	metabolite, lipid mode, GC-MS
Cyan	metabolite, polar mode, GC-MS
Blue	metabolite, LC-MS
Green	metabolite, negative mode, CE-MS
Limegreen	metabolite, positive mode, CE-MS

The prediction of regulatory relationships associated with At4g34410

QueryAt4g34410 DescriptionRRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) RAFL IDpda05584 C.R.C R.O.X.L.6/12 lines P.O.X. 100.0

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Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene Orangegene Yellowmetabolite, lipid mode, GC-MS Cyanmetabolite, polar mode, GC-MS Bluemetabolite, LC-MS Greenmetabolite, negative mode, CE-MS Limegreenmetabolite, positive mode, CE-MS

Candidate elements regulated by At4g34410

Genes

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Metabolites

TopGenes

Query At4g34410

Description RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)

RAFL ID pda05584

C.R. C

R.O.X.L. 6/12 lines

P.O.X. 100.0

Maroon over-expressed gene

Orange gene

Yellow metabolite, lipid mode, GC-MS

Cyan metabolite, polar mode, GC-MS

Blue metabolite, LC-MS

Green metabolite, negative mode, CE-MS

Limegreen metabolite, positive mode, CE-MS

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Genes