RnR The prediction of regulatory relationships associated with At4g34350

QueryAt4g34350
DescriptionHDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)
RAFL IDpda00655
C.R.C
R.O.X.L.14/20 lines
P.O.X. 99.2

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Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At4g34350

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At1g22500 135.8 100.0 0.460 zinc finger (C3HC4-type RING finger) family protein
At2g22990 98.3 100.0 0.875 SNG1 (SINAPOYLGLUCOSE 1)
At4g19170 86.9 100.0 0.695 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)
At3g46490 84.5 100.0 0.666 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
At5g45180 63.8 100.0 0.234 flavin-containing monooxygenase family protein / FMO family protein
At2g41450 60.6 100.0 0.118 N-acetyltransferase
At2g05540 60.2 100.0 0.499 glycine-rich protein
At2g42540 35.4 100.0 0.459 COR15A (COLD-REGULATED 15A)
At1g15180 34.0 100.0 0.773 MATE efflux family protein
At1g58025 30.1 100.0 0.189 DNA binding
At2g26960 30.0 100.0 0.225 AtMYB81 (myb domain protein 81)
At3g10910 28.0 100.0 0.358 zinc finger (C3HC4-type RING finger) family protein
At3g26290 24.3 99.9 0.659 CYP71B26
At2g22980 23.6 99.9 0.678 serine-type carboxypeptidase
At3g04320 23.1 99.9 0.105 endopeptidase inhibitor
At1g24540 22.7 99.9 0.067 CYP86C1
At2g18830 21.5 99.9 0.204 -
At4g04330 20.7 99.9 0.618 F:unknown;P:unknown;C:unknown;BPO
At5g20420 20.3 99.9 0.342 CHR42 (chromatin remodeling 42)
At3g46500 19.6 99.9 0.288 oxidoreductase, 2OG-Fe(II) oxygenase family protein
At1g70840 19.5 99.9 0.091 MLP31 (MLP-LIKE PROTEIN 31)
At2g02515 18.9 99.9 0.032 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At5g60110 18.7 99.9 0.089 APUM18 (Arabidopsis Pumilio 18)
At4g12270 18.4 99.9 0.275 copper amine oxidase family protein
At4g03400 17.6 99.9 0.742 DFL2 (DWARF IN LIGHT 2)
At3g46780 17.1 99.9 0.838 PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16)
At1g70850 16.9 99.9 0.332 MLP34 (MLP-LIKE PROTEIN 34)
At1g69190 15.8 99.9 0.066 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase
At1g26480 15.6 99.9 0.044 GRF12 (GENERAL REGULATORY FACTOR 12)
At4g13190 15.6 99.9 0.238 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase
At1g34240 14.7 99.9 0.085 transposable element gene

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 72.1 100.0 5/5 1 - - - - 96 84 110 123 180
GC-MS unknown 71.5 99.9 5/5 2 - - - - 147 129 247 241
GC-MS unknown 38.3 99.9 5/5 1 - - - - 83 145 103
GC-MS unknown 27.7 99.8 5/5 2 - - - - 91 473 115 229
GC-MS unknown 19.7 99.6 5/5 1 - - - - 147 355 221 281
GC-MS unknown 13.2 99.1 5/5 2 - - - - 147 281 133 221






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