RnR The prediction of regulatory relationships associated with At3g54220

QueryAt3g54220
DescriptionSCR (SCARECROW)
RAFL IDpda07844
C.R.C
R.O.X.L.10/10 lines
P.O.X. 100.0

Jump to MassBase to obtain the original metabolomics dataset of this over-expression experiment.

Click here to show genes regulating the gene of interest.

Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At3g54220

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At3g54220 196.7 100.0 1.000 SCR (SCARECROW)
At4g21630 22.3 99.9 0.107 subtilase family protein
At2g10010 19.6 99.9 0.133 transposable element gene
At2g02515 16.3 99.9 0.040 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At1g56090 14.6 99.9 0.799 tetratricopeptide repeat (TPR)-containing protein
At1g06340 12.7 99.8 0.326 agenet domain-containing protein
At5g07430 12.1 99.8 0.028 pectinesterase family protein
At1g60240 10.8 99.7 0.018 apical meristem formation protein-related
At3g49770 10.8 99.7 0.449 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM
At1g74220 10.7 99.7 0.193 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBV

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 153.1 100.0 4/5 1 - - - - 160 144 132 103
GC-MS unknown 30.8 99.8 5/5 2 - - - - 255 135 165 270
GC-MS unknown 25.5 99.7 5/5 2 - - - - 131
GC-MS unknown 25.3 99.7 4/5 1 - - - - 144 143 89 116
GC-MS unknown 21.1 99.6 1/5 2 - - - - 135 85 108
GC-MS unknown 19.6 99.6 5/5 1 - - - - 147 113 128
GC-MS unknown 13.6 99.1 5/5 1 - - - - 210 88 85
GC-MS Guanine 12.3 99.0 5/5 2 KPC00588 C00242 C5H5N5O 151.0494098 217 147 352 103
GC-MS unknown 12.2 99.0 5/5 1 - - - - 89 147 173
LC-MS unknown 10.4 98.8 1/5 1.3 - - - 718.2213 719.2291
LC-MS unknown 6.7 98.0 1/5 1.6 - - - 1126.3802 1127.3880
LC-MS Coniferin [Na] 4.8 97.1 1/5 1.9 KPC01452 C00761 C16H22O8 342.1314677 365.1194
LC-MS unknown 3.2 95.6 1/5 1.8 - - - 348.0849 349.0927
LC-MS unknown 2.9 95.1 1/5 1.2 - - - 372.1271 373.1349
CE-MS unknown 47.5 99.9 3/5 1.4 - - - 379 378
CE-MS unknown 27.9 99.7 1/5 1.8 - - - 101 102
CE-MS unknown 24.4 99.7 1/5 2.0 - - - 84 85
CE-MS unknown 16.4 99.4 3/5 1.5 - - - 119 118
CE-MS unknown 14.3 99.3 1/5 1.6 - - - 130 131
CE-MS unknown 11.1 99.0 1/5 1.6 - - - 127 126
CE-MS unknown 11.1 99.0 5/5 1.2 - - - 283 282






Back to the RnR portal site

Back to the KAGIANA project homepage