RnR The prediction of regulatory relationships associated with At2g46830

QueryAt2g46830
DescriptionCCA1 (CIRCADIAN CLOCK ASSOCIATED 1)
RAFL IDpda02803
C.R.O
R.O.X.L.10/11 lines
P.O.X. 100.0

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Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At2g46830

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At2g46830 122.0 100.0 1.000 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)
At1g61590 80.2 100.0 0.136 protein kinase, putative
At2g37440 52.9 100.0 0.149 endonuclease/exonuclease/phosphatase family protein
At4g23690 48.0 100.0 0.193 disease resistance-responsive family protein / dirigent family protein
At3g63160 44.3 100.0 0.326 F:molecular_function unknown;P:biological_process unknown;C:chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;P
At2g44790 43.0 100.0 0.198 UCC2 (UCLACYANIN 2)
At1g01120 39.6 100.0 0.461 KCS1 (3-KETOACYL-COA SYNTHASE 1)
At5g40990 37.0 100.0 0.203 GLIP1 (GDSL LIPASE1)
At2g41690 33.3 100.0 0.266 AT-HSFB3
At5g63390 28.2 100.0 0.159 F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At4g36430 24.3 99.9 0.167 peroxidase, putative
At2g03520 22.3 99.9 0.054 ATUPS4 (Arabidopsis thaliana ureide permease 4)
At4g18250 22.0 99.9 0.177 receptor serine/threonine kinase, putative
At2g39410 21.5 99.9 0.314 hydrolase, alpha/beta fold family protein
At5g52140 21.5 99.9 0.134 protein binding / zinc ion binding
At3g27510 21.0 99.9 0.142 protein binding / zinc ion binding
At4g15040 21.0 99.9 0.104 identical protein binding / serine-type endopeptidase
At2g20720 20.6 99.9 0.086 pentatricopeptide (PPR) repeat-containing protein
At5g22630 20.6 99.9 0.301 ADT5 (arogenate dehydratase 5)
At5g60890 20.3 99.9 0.370 MYB34 (MYB DOMAIN PROTEIN 34)
At3g21230 19.8 99.9 0.204 4CL5 (4-coumarate:CoA ligase 5)
At1g54000 19.0 99.9 0.259 myrosinase-associated protein, putative
At2g44480 18.2 99.9 0.168 BGLU17 (BETA GLUCOSIDASE 17)
At5g59810 18.1 99.9 0.093 SBT5.4
At2g17740 17.3 99.9 0.077 DC1 domain-containing protein
At2g33130 17.3 99.9 0.186 RALFL18 (ralf-like 18)
At1g70230 17.1 99.9 0.520 F:unknown;P:biological_process unknown;C:endomembrane system;P
At1g55570 16.3 99.9 0.068 sks12 (SKU5 Similar 12)
At3g58540 16.3 99.9 0.198 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At1g03850 16.1 99.9 0.172 glutaredoxin family protein
At3g01860 15.7 99.9 0.490 F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM
At3g22540 15.6 99.9 0.203 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g67980 15.4 99.9 0.165 CCoAMT
At1g37140 15.3 99.9 0.200 MCT1 (mei2 C-Terminal RRM only like 1)
At3g59740 15.0 99.9 0.197 receptor lectin kinase 3 (lecRK3)
At5g57730 15.0 99.9 0.062 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g80100 14.7 99.9 0.157 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)
At1g18710 14.6 99.9 0.336 AtMYB47 (myb domain protein 47)

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 22.1 99.6 3/5 2 - - - - 91 258 253 115
GC-MS unknown 19.0 99.5 4/5 1 - - - - 106 137
GC-MS unknown 17.4 99.4 5/5 1 - - - - 85 99 113
GC-MS unknown 14.7 99.3 5/5 2 - - - - 145 88
GC-MS unknown 14.6 99.2 5/5 2 - - - - 180 136 85 106
LC-MS unknown 141.5 99.9 1/5 1.0 - - - 489.1689 490.1767
LC-MS unknown 99.9 99.8 1/5 1.1 - - - 504.1775 505.1853
LC-MS unknown 95.8 99.8 4/5 1.2 - - - 576.2087 577.2165
LC-MS unknown 95.4 99.8 1/5 1.4 - - - 742.2683 743.2761
LC-MS unknown 87.9 99.8 1/5 1.0 - - - 442.1623 443.1701
LC-MS unknown 82.8 99.8 1/5 1.3 - - - 724.2581 725.2659
LC-MS unknown 79.5 99.8 1/5 1.1 - - - 644.2167 645.2245
LC-MS unknown 64.3 99.8 1/5 1.3 - - - 760.2889 761.2967
LC-MS unknown 55.1 99.7 1/5 1.0 - - - 564.2093 565.2171
LC-MS unknown 49.9 99.7 1/5 1.7 - - - 770.2698 771.2776
LC-MS unknown 35.5 99.6 4/5 1.1 - - - 482.1554 483.1632
LC-MS unknown 34.3 99.6 1/5 1.5 - - - 630.2814 631.2892
LC-MS unknown 25.9 99.5 2/5 1.1 - - - 618.2769 619.2847
LC-MS unknown 22.7 99.4 1/5 2.4 - - - 1002.3676 1003.3754
LC-MS unknown 21.2 99.4 5/5 1.6 - - - 574.1902 575.1980
LC-MS unknown 20.9 99.4 2/5 1.3 - - - 544.1818 545.1896
LC-MS unknown 16.2 99.2 1/5 1.6 - - - 315.0743 316.0821
LC-MS unknown 15.8 99.2 4/5 1.3 - - - 572.1782 573.1860
LC-MS unknown 15.0 99.2 2/5 1.1 - - - 577.2107 578.2185
LC-MS unknown 14.6 99.1 1/5 1.7 - - - 650.2446 651.2524
LC-MS unknown 13.4 99.1 2/5 1.8 - - - 738.2716 739.2794
CE-MS unknown 74.3 99.9 5/5 1.3 - - - 104 103
CE-MS unknown 32.1 99.8 2/5 1.5 - - - 347 348
CE-MS unknown 28.7 99.7 5/5 1.3 - - - 164 163
CE-MS unknown 27.0 99.7 1/5 1.7 - - - 89 88
CE-MS unknown 25.5 99.7 4/5 1.7 - - - 332 331
CE-MS unknown 21.4 99.6 5/5 1.8 - - - 200 199
CE-MS unknown 20.7 99.6 5/5 1.5 - - - 73 74
CE-MS unknown 19.7 99.5 5/5 1.2 - - - 160 161
CE-MS unknown 16.9 99.4 5/5 1.2 - - - 136 135
CE-MS unknown 16.8 99.4 1/5 1.5 - - - 247 246
CE-MS unknown 16.5 99.4 5/5 1.4 - - - 384 383
CE-MS unknown 15.2 99.4 5/5 1.4 - - - 125 126
CE-MS unknown 13.9 99.3 5/5 1.5 - - - 125 126
CE-MS unknown 12.7 99.2 5/5 1.1 - - - 92 91
CE-MS unknown 12.7 99.2 5/5 1.5 - - - 146 145
CE-MS unknown 12.7 99.2 5/5 1.8 - - - 117 118
CE-MS unknown 12.0 99.1 5/5 1.5 - - - 118 117
CE-MS unknown 11.5 99.1 2/5 1.4 - - - 324 323
CE-MS unknown 10.8 99.0 1/5 1.5 - - - 240 239
CE-MS unknown 10.8 99.0 5/5 1.1 - - - 181 182






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