RnR The prediction of regulatory relationships associated with At2g42200

QueryAt2g42200
DescriptionSPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)
RAFL IDpda00531
C.R.S
R.O.X.L.10/10 lines
P.O.X. 100.0

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Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At2g42200

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At2g42200 210.7 100.0 1.000 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)
At2g29350 148.7 100.0 0.133 SAG13
At3g55970 133.8 100.0 0.068 oxidoreductase, 2OG-Fe(II) oxygenase family protein
At2g38380 132.1 100.0 0.066 peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E
At4g37990 116.5 100.0 0.098 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)
At1g53810 111.4 100.0 0.232 transposable element gene
At5g07010 101.8 100.0 0.084 ST2A (SULFOTRANSFERASE 2A)
At5g20940 93.4 100.0 0.361 glycosyl hydrolase family 3 protein
At1g54300 88.8 100.0 0.159 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO
At5g50915 79.5 100.0 0.416 basic helix-loop-helix (bHLH) family protein
At1g44350 72.7 100.0 0.252 ILL6
At3g48580 72.3 100.0 0.144 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
At5g19110 70.9 100.0 0.046 extracellular dermal glycoprotein-related / EDGP-related
At3g50280 69.1 100.0 0.656 transferase family protein
At1g52770 62.8 100.0 0.375 phototropic-responsive NPH3 family protein
At1g59940 62.7 100.0 0.104 ARR3 (RESPONSE REGULATOR 3)
At4g39480 60.8 100.0 0.505 CYP96A9 (CYTOCHROME P450 96 A9)
At5g15230 45.3 100.0 0.415 GASA4 (GAST1 PROTEIN HOMOLOG 4)
At1g65620 42.9 100.0 0.524 AS2 (ASYMMETRIC LEAVES 2)
At4g22610 42.5 100.0 0.058 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At2g29470 42.3 100.0 0.090 ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)
At1g06180 39.6 100.0 0.435 ATMYB13 (MYB DOMAIN PROTEIN 13)
At5g54250 38.5 100.0 0.353 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)
At1g64020 38.0 100.0 0.225 serpin-related / serine protease inhibitor-related
At2g38750 37.3 100.0 0.235 ANNAT4 (ANNEXIN ARABIDOPSIS 4)
At1g48750 36.6 100.0 0.475 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At3g23560 34.3 100.0 0.368 ALF5 (ABERRANT LATERAL ROOT FORMATION 5)
At1g62570 34.0 100.0 0.128 FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)
At1g71960 31.8 100.0 0.251 ABC transporter family protein
At3g55090 29.6 100.0 0.168 ATPase, coupled to transmembrane movement of substances
At1g61890 28.6 100.0 0.262 MATE efflux family protein
At4g24120 28.1 100.0 0.379 YSL1 (YELLOW STRIPE LIKE 1)
At3g52270 26.2 99.9 0.342 ATP binding / RNA polymerase II transcription factor
At2g33790 25.6 99.9 0.040 AGP30 (ARABINOGALACTAN PROTEIN30)
At5g57785 25.4 99.9 0.293 F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At4g37980 25.3 99.9 0.316 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)
At3g55110 24.7 99.9 0.794 ABC transporter family protein
At2g39010 24.4 99.9 0.351 PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E)
At3g10720 24.2 99.9 0.176 pectinesterase, putative
At1g07440 23.5 99.9 0.419 tropinone reductase, putative / tropine dehydrogenase, putative
At1g26770 22.7 99.9 0.312 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)
At2g30520 22.4 99.9 0.244 RPT2 (ROOT PHOTOTROPISM 2)
At5g15580 21.7 99.9 0.594 LNG1 (LONGIFOLIA1)
At1g44760 21.4 99.9 0.758 universal stress protein (USP) family protein
At2g37770 21.4 99.9 0.199 aldo/keto reductase family protein
At2g29460 21.3 99.9 0.088 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)
At4g02810 20.7 99.9 0.411 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA
At4g37430 20.1 99.9 0.310 CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)
At3g55930 19.8 99.9 0.193 RNA splicing factor-related
At3g56260 19.8 99.9 0.340 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO
At1g20080 19.7 99.9 0.207 SYTB
At3g13610 19.5 99.9 0.062 oxidoreductase, 2OG-Fe(II) oxygenase family protein
At2g39030 19.3 99.9 0.088 GCN5-related N-acetyltransferase (GNAT) family protein
At3g52780 19.3 99.9 0.090 PAP20
At4g15490 19.1 99.9 0.351 UGT84A3
At5g13170 18.5 99.9 0.145 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)
At1g10980 18.3 99.9 0.763 -
At1g77270 18.2 99.9 0.704 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBF
At2g19210 18.2 99.9 0.243 leucine-rich repeat protein kinase, putative
At2g38920 18.2 99.9 0.160 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related
At1g35910 18.0 99.9 0.059 trehalose-6-phosphate phosphatase, putative
At1g76250 17.3 99.9 0.214 F:unknown;P:biological_process unknown;C:endomembrane system;POM
At1g58360 17.2 99.9 0.411 AAP1 (AMINO ACID PERMEASE 1)
At1g72290 17.2 99.9 0.521 trypsin and protease inhibitor family protein / Kunitz family protein
At3g21670 16.5 99.9 0.361 nitrate transporter (NTP3)
At3g23630 16.5 99.9 0.207 ATIPT7
At2g46750 16.2 99.9 0.078 FAD-binding domain-containing protein
At5g61605 16.0 99.9 0.327 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At4g00870 15.7 99.9 0.800 basic helix-loop-helix (bHLH) family protein
At1g02813 15.4 99.9 0.482 F:unknown;P:biological_process unknown;C:endomembrane system;PO
At3g55940 15.4 99.9 0.222 phosphoinositide-specific phospholipase C, putative
At2g33380 15.3 99.9 0.372 RD20 (RESPONSIVE TO DESSICATION 20)
At5g63390 15.3 99.9 0.260 F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At1g63190 15.2 99.9 0.235 -
At1g51820 15.0 99.9 0.053 leucine-rich repeat protein kinase, putative

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 30.1 99.8 4/5 2 - - - - 100 147
GC-MS unknown 24.9 99.7 1/5 2 - - - - 174 86 100
GC-MS unknown 20.8 99.6 1/5 2 - - - - 103 147 217 230 164
GC-MS unknown 17.2 99.4 5/5 1 - - - - 147 133 290 205 319
GC-MS unknown 12.7 99.0 1/5 2 - - - - 147 204 191 318
GC-MS gamma-Tocopherol 12.3 99.0 5/5 2 KPC01439 C02483 C28H48O2 416.3654308 222 488 263
GC-MS unknown 12.2 99.0 5/5 1 - - - - 103 147 205 319
LC-MS unknown 58.0 99.7 2/5 1.2 - - - 1141.4344 1142.4422
LC-MS unknown 31.1 99.6 4/5 1.7 - - - 793.2723 794.2801
LC-MS unknown 24.3 99.5 5/5 1.3 - - - 312.1457 313.1535
LC-MS unknown 21.4 99.4 2/5 1.5 - - - 544.2275 545.2353
LC-MS unknown 20.7 99.4 1/5 1.5 - - - 835.2929 836.3007
LC-MS unknown 18.5 99.3 5/5 1.7 - - - 1224.3529 1225.3607
LC-MS unknown 14.7 99.1 3/5 1.6 - - - 821.3081 822.3159
LC-MS unknown 13.8 99.1 2/5 1.3 - - - 823.3259 824.3337
CE-MS unknown 28.7 99.7 2/5 1.4 - - - 153 152
CE-MS unknown 13.7 99.3 1/5 1.7 - - - 507 506
CE-MS unknown 13.5 99.2 5/5 1.4 - - - 251 252
CE-MS unknown 11.6 99.1 5/5 1.4 - - - 174 173
CE-MS unknown 9.1 98.8 5/5 1.4 - - - 175 174






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