RnR The prediction of regulatory relationships associated with At2g39900

QueryAt2g39900
DescriptionLIM domain-containing protein
RAFL IDpda07598
C.R.C
R.O.X.L.12/12 lines
P.O.X. 100.0

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Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At2g39900

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At2g39900 146.6 100.0 1.000 LIM domain-containing protein
At5g55250 102.4 100.0 0.349 IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)
At5g05690 72.3 100.0 0.667 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)
At5g22980 68.0 100.0 0.327 scpl47 (serine carboxypeptidase-like 47)
At4g17980 66.8 100.0 0.511 anac071 (Arabidopsis NAC domain containing protein 71)
At2g21050 60.3 100.0 0.646 amino acid permease, putative
At4g00416 57.3 100.0 0.114 MBD3
At2g28680 55.2 100.0 0.067 cupin family protein
At3g10080 53.1 100.0 0.789 germin-like protein, putative
At3g17640 50.6 100.0 0.589 leucine-rich repeat family protein
At3g03660 48.2 100.0 0.465 WOX11 (WUSCHEL related homeobox 11)
At2g33830 47.4 100.0 0.621 dormancy/auxin associated family protein
At2g06850 47.0 100.0 0.711 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)
At4g24510 45.4 100.0 0.537 CER2 (ECERIFERUM 2)
At1g14185 44.9 100.0 0.464 glucose-methanol-choline (GMC) oxidoreductase family protein
At3g56810 44.3 100.0 0.737 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P
At4g03210 41.7 100.0 0.631 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)
At1g25510 40.8 100.0 0.481 aspartyl protease family protein
At5g48280 36.0 100.0 0.175 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At1g66940 35.1 100.0 0.699 protein kinase-related
At3g20820 34.9 100.0 0.660 leucine-rich repeat family protein
At5g61720 34.4 100.0 0.065 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM
At1g13250 32.3 100.0 0.792 GATL3 (Galacturonosyltransferase-like 3)
At3g03670 31.7 100.0 0.205 peroxidase, putative
At1g69580 30.4 100.0 0.613 transcription factor
At1g79760 29.7 100.0 0.131 DTA4 (DOWNSTREAM TARGET OF AGL15-4)
At1g13610 29.4 100.0 0.405 -
At3g10525 29.2 100.0 0.676 -
At4g26320 29.0 100.0 0.438 AGP13 (arabinogalactan protein 13)
At4g19680 28.8 100.0 0.397 IRT2
At2g04850 28.4 100.0 0.628 auxin-responsive protein-related
At5g48500 28.2 100.0 0.554 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g51190 27.2 99.9 0.197 AP2 domain-containing transcription factor, putative
At1g72230 26.8 99.9 0.605 plastocyanin-like domain-containing protein
At4g14130 26.7 99.9 0.374 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)
At4g00890 26.3 99.9 0.079 proline-rich family protein
At1g29980 25.7 99.9 0.604 -
At1g63070 25.6 99.9 0.353 pentatricopeptide (PPR) repeat-containing protein
At4g29230 25.5 99.9 0.330 anac075 (Arabidopsis NAC domain containing protein 75)
At5g60490 24.8 99.9 0.334 FLA12
At1g49200 24.6 99.9 0.445 zinc finger (C3HC4-type RING finger) family protein
At2g32990 23.9 99.9 0.658 AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)
At1g32670 23.5 99.9 0.374 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g29500 23.4 99.9 0.511 auxin-responsive protein, putative
At5g14400 23.3 99.9 0.087 CYP724A1
At1g23080 23.2 99.9 0.667 PIN7 (PIN-FORMED 7)
At5g24320 22.9 99.9 0.673 WD-40 repeat family protein
At1g02640 22.3 99.9 0.351 BXL2 (BETA-XYLOSIDASE 2)
At1g32650 22.1 99.9 0.067 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown
At2g28950 22.1 99.9 0.682 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)
At5g07800 21.3 99.9 0.611 flavin-containing monooxygenase family protein / FMO family protein
At1g36940 20.9 99.9 0.609 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g14700 20.8 99.9 0.556 PAP3 (PURPLE ACID PHOSPHATASE 3)
At4g27280 20.5 99.9 0.473 calcium-binding EF hand family protein
At4g02290 20.0 99.9 0.561 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)
At1g23540 19.2 99.9 0.079 protein kinase family protein
At5g42720 19.0 99.9 0.545 glycosyl hydrolase family 17 protein
At3g50220 18.9 99.9 0.191 F:unknown;P:biological_process unknown;C:cellular_component unknown;POB
At3g28420 18.6 99.9 0.608 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g47500 18.5 99.9 0.374 pectinesterase family protein
At2g45840 18.4 99.9 0.246 -
At3g56480 18.4 99.9 0.698 myosin heavy chain-related
At4g00300 18.4 99.9 0.725 fringe-related protein
At4g17460 18.4 99.9 0.629 HAT1
At2g19580 18.3 99.9 0.619 TET2 (TETRASPANIN2)
At2g36120 17.8 99.9 0.402 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)
At3g15540 17.8 99.9 0.406 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)
At2g26710 17.5 99.9 0.484 BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)
At5g48070 17.5 99.9 0.473 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)
At4g01130 17.3 99.9 0.698 acetylesterase, putative
At2g01430 17.2 99.9 0.395 ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17)
At4g11190 17.0 99.9 0.451 disease resistance-responsive family protein / dirigent family protein
At1g23340 16.9 99.9 0.704 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB
At4g34980 16.9 99.9 0.673 SLP2
At1g63520 16.7 99.9 0.490 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g13820 16.7 99.9 0.795 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
At2g06640 16.5 99.9 0.244 transposable element gene
At2g34820 16.3 99.9 0.238 basic helix-loop-helix (bHLH) family protein
At3g06360 16.3 99.9 0.477 AGP27
At2g41480 16.1 99.9 0.376 electron carrier/ heme binding / peroxidase
At2g17940 15.8 99.9 0.249 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB
At2g47860 15.7 99.9 0.407 phototropic-responsive NPH3 family protein
At4g24670 15.7 99.9 0.608 TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2)
At5g47370 15.7 99.9 0.605 HAT2
At5g02640 15.6 99.9 0.612 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g52900 15.5 99.9 0.685 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBAF
At2g17960 15.4 99.9 0.210 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g18260 15.4 99.9 0.286 SYP112 (SYNTAXIN OF PLANTS 112)
At4g17770 15.4 99.9 0.616 ATTPS5
At1g42700 15.2 99.9 0.346 F:molecular_function unknown;P:response to cold;C:nucleus;P
At1g32190 15.0 99.9 0.573 -
At4g03790 15.0 99.9 0.149 transposable element gene
At4g00440 14.9 99.9 0.709 F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMPBF
At1g47960 14.6 99.9 0.445 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)
At4g32280 14.6 99.9 0.400 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 14.6 99.2 3/5 1 - - - - 147 103 129 217 294 361
GC-MS unknown 13.2 99.1 3/5 1 - - - - 85 99 113
GC-MS unknown 12.8 99.1 5/5 1 - - - - 89 217
GC-MS unknown 9.2 98.4 5/5 1 - - - - 89 147 205
GC-MS unknown 9.2 98.4 5/5 1 - - - - 174 86 100
LC-MS unknown 35.3 99.6 1/5 1.1 - - - 218.0964 219.1042
LC-MS unknown 15.7 99.2 1/5 1.3 - - - 853.3019 854.3097
LC-MS unknown 15.1 99.2 1/5 1.8 - - - 132.0588 133.0666
LC-MS unknown 10.5 98.8 5/5 1.2 - - - 268.1348 269.1426
LC-MS unknown 8.8 98.5 1/5 1.8 - - - 334.1067 335.1145
CE-MS unknown 39.9 99.9 5/5 1.3 - - - 126 127
CE-MS unknown 38.6 99.9 5/5 1.2 - - - 163 164
CE-MS unknown 35.8 99.8 3/5 2.1 - - - 135 136
CE-MS unknown 34.6 99.8 5/5 1.8 - - - 162 163
CE-MS unknown 33.9 99.8 5/5 1.6 - - - 161 162
CE-MS unknown 33.1 99.8 5/5 1.8 - - - 189 190
CE-MS unknown 33.0 99.8 5/5 1.0 - - - 147 148
CE-MS unknown 32.9 99.8 5/5 1.6 - - - 203 204
CE-MS unknown 29.3 99.8 5/5 2.5 - - - 243 244
CE-MS unknown 29.1 99.8 5/5 1.3 - - - 173 174
CE-MS unknown 28.9 99.7 5/5 1.6 - - - 163 164
CE-MS unknown 28.5 99.7 5/5 1.6 - - - 133 134
CE-MS unknown 28.1 99.7 5/5 1.8 - - - 163 164
CE-MS unknown 27.9 99.7 5/5 1.0 - - - 173 174
CE-MS unknown 27.8 99.7 5/5 1.6 - - - 173 174
CE-MS unknown 27.7 99.7 5/5 1.5 - - - 161 162
CE-MS unknown 27.5 99.7 5/5 1.4 - - - 120 121
CE-MS unknown 27.5 99.7 5/5 1.2 - - - 121 122
CE-MS unknown 26.5 99.7 5/5 1.9 - - - 173 174
CE-MS unknown 26.4 99.7 5/5 1.8 - - - 240 241
CE-MS unknown 26.2 99.7 1/5 1.9 - - - 133 134
CE-MS unknown 25.6 99.7 5/5 1.1 - - - 125 126
CE-MS unknown 25.5 99.7 5/5 1.9 - - - 163 164
CE-MS unknown 25.5 99.7 5/5 1.3 - - - 184 185
CE-MS unknown 24.6 99.7 5/5 1.5 - - - 136 137
CE-MS unknown 24.5 99.7 5/5 1.5 - - - 135 136
CE-MS unknown 24.3 99.7 5/5 1.4 - - - 115 116
CE-MS unknown 24.3 99.7 5/5 1.7 - - - 121 122
CE-MS unknown 24.1 99.7 5/5 1.5 - - - 161 162
CE-MS unknown 24.1 99.7 5/5 1.4 - - - 213 214
CE-MS unknown 24.0 99.6 5/5 1.3 - - - 133 134
CE-MS unknown 23.9 99.6 5/5 1.3 - - - 115 116
CE-MS unknown 23.8 99.6 5/5 1.2 - - - 203 204
CE-MS unknown 23.7 99.6 5/5 1.3 - - - 173 174
CE-MS unknown 23.4 99.6 5/5 1.1 - - - 126 127
CE-MS unknown 23.0 99.6 5/5 1.4 - - - 161 162
CE-MS unknown 23.0 99.6 5/5 1.6 - - - 189 190
CE-MS unknown 23.0 99.6 5/5 1.6 - - - 203 204
CE-MS unknown 22.9 99.6 5/5 1.6 - - - 117 118
CE-MS unknown 22.4 99.6 5/5 1.2 - - - 155 156
CE-MS unknown 22.4 99.6 5/5 1.6 - - - 160 161
CE-MS unknown 22.2 99.6 5/5 1.1 - - - 181 182
CE-MS unknown 20.5 99.6 5/5 1.5 - - - 203 204
CE-MS unknown 20.1 99.5 5/5 1.1 - - - 163 164
CE-MS unknown 19.8 99.5 5/5 1.7 - - - 244 245
CE-MS unknown 19.8 99.5 1/5 1.6 - - - 251 252
CE-MS unknown 19.3 99.5 5/5 1.4 - - - 131 132
CE-MS L-Methionine 19.3 99.5 5/5 1.4 KPC00719 C00073 C5H11NO2S 149.0510496 150
CE-MS unknown 18.9 99.5 5/5 1.6 - - - 131 132
CE-MS unknown 17.6 99.5 5/5 1.5 - - - 161 162
CE-MS unknown 17.4 99.5 5/5 1.5 - - - 189 190
CE-MS unknown 17.1 99.4 5/5 1.4 - - - 167 168
CE-MS unknown 17.0 99.4 5/5 1.2 - - - 218 219
CE-MS unknown 16.6 99.4 5/5 1.3 - - - 161 162
CE-MS unknown 16.0 99.4 5/5 1.1 - - - 243 244
CE-MS unknown 15.5 99.4 5/5 1.1 - - - 167 168
CE-MS unknown 15.5 99.4 5/5 1.7 - - - 167 168
CE-MS unknown 15.4 99.4 5/5 1.6 - - - 167 168
CE-MS unknown 15.3 99.4 5/5 1.0 - - - 165 166
CE-MS unknown 14.8 99.3 4/5 1.8 - - - 146 145
CE-MS unknown 14.5 99.3 5/5 1.3 - - - 201 202
CE-MS unknown 13.9 99.3 5/5 1.3 - - - 120 121
CE-MS unknown 13.6 99.3 5/5 1.0 - - - 173 174
CE-MS unknown 13.5 99.2 5/5 1.2 - - - 177 178
CE-MS unknown 13.2 99.2 5/5 1.2 - - - 161 162
CE-MS unknown 13.2 99.2 4/5 1.6 - - - 203 204
CE-MS L-Lysine 13.1 99.2 5/5 1.6 KPC00717 C00047 C6H14N2O2 146.1055277 147
CE-MS unknown 12.6 99.2 5/5 1.3 - - - 176 177
CE-MS unknown 12.3 99.2 2/5 1.3 - - - 125 126
CE-MS unknown 12.1 99.1 5/5 1.0 - - - 189 190
CE-MS unknown 12.0 99.1 5/5 1.3 - - - 121 122
CE-MS unknown 11.6 99.1 5/5 1.7 - - - 213 214
CE-MS unknown 11.0 99.0 4/5 1.6 - - - 154 153
CE-MS unknown 10.7 99.0 5/5 1.4 - - - 126 127
CE-MS unknown 10.7 99.0 5/5 1.4 - - - 243 244






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