RnR The prediction of regulatory relationships associated with At2g02080

QueryAt2g02080
DescriptionAtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4)
RAFL IDpda10762
C.R.C
R.O.X.L.5/5 lines
P.O.X. 80.4

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Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At2g02080

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At3g15170 97.6 100.0 0.111 CUC1 (CUP-SHAPED COTYLEDON1)
At1g16310 79.7 100.0 0.364 cation efflux family protein
At3g21670 58.5 100.0 0.664 nitrate transporter (NTP3)
At4g29640 56.7 100.0 0.103 cytidine deaminase, putative / cytidine aminohydrolase, putative
At2g23950 55.5 100.0 0.567 leucine-rich repeat family protein / protein kinase family protein
At5g08000 54.1 100.0 0.517 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)
At3g19310 49.8 100.0 0.043 phospholipase C/ phosphoric diester hydrolase
At4g29570 49.3 100.0 0.109 cytidine deaminase, putative / cytidine aminohydrolase, putative
At3g08500 45.7 100.0 0.168 MYB83 (myb domain protein 83)
At5g14940 45.1 100.0 0.636 proton-dependent oligopeptide transport (POT) family protein
At3g21850 45.0 100.0 0.178 ASK9 (ARABIDOPSIS SKP1-LIKE 9)
At1g59535 44.0 100.0 0.075 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g21560 42.7 100.0 0.405 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV
At1g80730 41.7 100.0 0.302 ZFP1 (ZINC-FINGER PROTEIN 1)
At3g43390 38.7 100.0 0.081 transposable element gene
At4g02290 35.1 100.0 0.371 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)
At4g09890 33.8 100.0 0.553 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g01430 32.1 100.0 0.259 ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17)
At3g59010 31.9 100.0 0.485 pectinesterase family protein
At1g63960 31.8 100.0 0.106 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g40900 30.7 100.0 0.462 nodulin MtN21 family protein
At4g29600 29.4 100.0 0.141 cytidine deaminase, putative / cytidine aminohydrolase, putative
At1g62480 29.2 100.0 0.534 vacuolar calcium-binding protein-related
At1g73220 28.3 100.0 0.194 AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)
At2g41480 27.9 100.0 0.202 electron carrier/ heme binding / peroxidase
At1g13670 27.5 100.0 0.398 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g79760 27.3 99.9 0.086 DTA4 (DOWNSTREAM TARGET OF AGL15-4)
At4g03210 26.3 99.9 0.602 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)
At4g07780 25.7 99.9 0.123 transposable element gene
At5g10680 25.6 99.9 0.079 calmodulin-binding protein-related
At2g22960 25.2 99.9 0.150 serine carboxypeptidase S10 family protein
At1g55600 24.1 99.9 0.236 WRKY10 (WRKY DNA-BINDING PROTEIN 10)
At1g48660 24.0 99.9 0.214 auxin-responsive GH3 family protein
At1g49200 23.9 99.9 0.540 zinc finger (C3HC4-type RING finger) family protein
At5g62800 22.8 99.9 0.300 seven in absentia (SINA) family protein
At1g22330 22.6 99.9 0.620 RNA binding / nucleic acid binding / nucleotide binding
At5g55250 22.4 99.9 0.286 IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)
At3g62100 22.2 99.9 0.277 IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)
At3g21860 22.0 99.9 0.120 ASK10 (ARABIDOPSIS SKP1-LIKE 10)
At2g28780 21.7 99.9 0.202 F:unknown;P:biological_process unknown;C:mitochondrion;BPO
At4g29620 21.3 99.9 0.124 cytidine deaminase, putative / cytidine aminohydrolase, putative
At1g63950 20.7 99.9 0.182 heavy-metal-associated domain-containing protein
At2g23060 20.3 99.9 0.237 GCN5-related N-acetyltransferase (GNAT) family protein
At5g40320 20.3 99.9 0.223 DC1 domain-containing protein
At5g01520 20.2 99.9 0.568 zinc finger (C3HC4-type RING finger) family protein
At4g31330 19.7 99.9 0.339 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO
At5g14400 19.2 99.9 0.060 CYP724A1
At4g01430 18.8 99.9 0.370 nodulin MtN21 family protein
At1g23050 18.7 99.9 0.558 hydroxyproline-rich glycoprotein family protein
At5g05890 18.5 99.9 0.411 UDP-glucoronosyl/UDP-glucosyl transferase family protein
At2g17490 18.1 99.9 0.312 transposable element gene
At2g37460 17.7 99.9 0.689 nodulin MtN21 family protein
At5g56540 17.4 99.9 0.231 AGP14 (ARABINOGALACTAN PROTEIN 14)
At1g11590 17.3 99.9 0.107 pectin methylesterase, putative
At3g23730 17.0 99.9 0.593 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
At1g70985 16.4 99.9 0.408 hydroxyproline-rich glycoprotein family protein
At1g71970 16.2 99.9 0.790 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POM
At4g01470 16.2 99.9 0.110 TIP1
At3g03660 15.9 99.9 0.437 WOX11 (WUSCHEL related homeobox 11)
At1g60030 15.8 99.9 0.213 xanthine/uracil permease family protein
At3g47340 15.8 99.9 0.444 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)
At1g29430 15.7 99.9 0.626 auxin-responsive family protein
At3g55870 15.7 99.9 0.065 anthranilate synthase, alpha subunit, putative
At4g30830 15.7 99.9 0.143 F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV
At1g67750 15.3 99.9 0.512 pectate lyase family protein
At2g23860 15.3 99.9 0.208 -
At1g47960 15.2 99.9 0.558 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)
At3g14760 14.9 99.9 0.308 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At5g25840 14.9 99.9 0.605 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At5g49360 14.8 99.9 0.590 BXL1 (BETA-XYLOSIDASE 1)
At1g03010 14.7 99.9 0.408 phototropic-responsive NPH3 family protein
At1g32190 14.7 99.9 0.430 -
At1g11610 14.6 99.9 0.197 CYP71A18
At2g47860 14.6 99.9 0.227 phototropic-responsive NPH3 family protein

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 145.5 100.0 1/5 1 - - - - 178 161 133
GC-MS unknown 66.5 99.9 4/5 1 - - - - 204 191 147
GC-MS unknown 31.3 99.8 5/5 2 - - - - 147 204 361 217
GC-MS unknown 21.7 99.6 5/5 2 - - - - 135 107 247
GC-MS unknown 16.4 99.4 4/5 2 - - - - 204 147 217 361
GC-MS unknown 14.9 99.3 5/5 2 - - - - 147 221 281 355 207
GC-MS unknown 14.5 99.2 5/5 2 - - - - 143 129 199 326 283
GC-MS unknown 14.0 99.2 5/5 1 - - - - 147 117 103 292
GC-MS unknown 13.8 99.2 5/5 1 - - - - 129 217 260 156
GC-MS unknown 12.0 99.0 5/5 2 - - - - 130 324 245 280 147
LC-MS unknown 51.7 99.7 1/5 1.0 - - - 148.0574 149.0652
LC-MS unknown 15.5 99.2 1/5 1.8 - - - 569.2158 570.2236
LC-MS unknown 11.8 98.9 2/5 2.0 - - - 324.1132 325.1210
LC-MS unknown 10.4 98.8 5/5 1.9 - - - 1057.4277 1058.4355
LC-MS unknown 9.8 98.7 5/5 1.1 - - - 172.1469 173.1547
CE-MS unknown 31.3 99.8 2/5 1.8 - - - 219 218
CE-MS unknown 23.3 99.6 3/5 1.9 - - - 138 139
CE-MS unknown 17.0 99.4 2/5 2.2 - - - 302 301
CE-MS unknown 14.7 99.3 2/5 1.8 - - - 322 321
CE-MS unknown 14.0 99.3 5/5 1.3 - - - 194 193






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