RnR The prediction of regulatory relationships associated with At1g43700

QueryAt1g43700
DescriptionVIP1 (VIRE2-INTERACTING PROTEIN 1)
RAFL IDpda03854
C.R.C
R.O.X.L.5/5 lines
P.O.X. 100.0

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Click here to extract genes up-regulated and also co-expressed.

Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At1g43700

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At1g43700 117.3 100.0 1.000 VIP1 (VIRE2-INTERACTING PROTEIN 1)
At4g00770 113.0 100.0 0.418 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFVB
At1g19530 74.3 100.0 0.488 F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P
At4g16990 69.0 100.0 0.544 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)
At4g36260 66.0 100.0 0.483 STY2 (STYLISH 2)
At4g21200 51.4 100.0 0.345 GA2OX8 (GIBBERELLIN 2-OXIDASE 8)
At3g12540 43.8 100.0 0.264 F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA
At4g02140 40.2 100.0 0.095 F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P
At1g52440 39.4 100.0 0.253 -
At5g07030 37.2 100.0 0.543 aspartic-type endopeptidase
At2g29130 31.7 100.0 0.155 LAC2 (laccase 2)
At2g45850 28.9 100.0 0.759 DNA-binding family protein
At4g19850 28.7 100.0 0.360 ATPP2-A2
At2g45670 27.5 100.0 0.808 calcineurin B subunit-related
At5g49240 27.3 99.9 0.372 APRR4 (PSEUDO-RESPONSE REGULATOR 4)
At5g04370 27.2 99.9 0.408 NAMT1
At4g02150 27.1 99.9 0.683 MOS6 (MODIFIER OF SNC1, 6)
At1g78430 26.3 99.9 0.354 -
At1g80730 25.5 99.9 0.385 ZFP1 (ZINC-FINGER PROTEIN 1)
At1g19540 25.4 99.9 0.494 isoflavone reductase, putative
At4g20510 25.0 99.9 0.174 transposable element gene
At5g65330 25.0 99.9 0.147 AGL78 (AGAMOUS-LIKE 78)
At5g03590 24.3 99.9 0.114 GDSL-motif lipase/hydrolase protein-related
At1g16380 23.3 99.9 0.111 ATCHX1
At1g63930 23.2 99.9 0.082 F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO
At5g41310 23.0 99.9 0.120 kinesin motor protein-related
At5g14920 22.5 99.9 0.612 gibberellin-regulated family protein
At2g06640 21.7 99.9 0.286 transposable element gene
At4g36470 21.6 99.9 0.599 S-adenosyl-L-methionine:carboxyl methyltransferase family protein
At4g05580 21.0 99.9 0.193 transposable element gene
At4g08600 21.0 99.9 0.157 transposable element gene
At5g41660 20.8 99.9 0.517 F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P
At1g12180 19.9 99.9 0.111 -
At2g45820 19.9 99.9 0.786 DNA-binding protein, putative
At2g46310 19.3 99.9 0.552 CRF5 (CYTOKININ RESPONSE FACTOR 5)
At4g36600 19.1 99.9 0.152 -
At2g14900 18.8 99.9 0.552 gibberellin-regulated family protein
At4g03660 18.3 99.9 0.447 transposable element gene
At2g24560 18.1 99.9 0.271 carboxylesterase/ hydrolase, acting on ester bonds
At1g10620 17.7 99.9 0.019 protein kinase family protein
At2g43680 17.7 99.9 0.829 IQD14
At4g14180 17.7 99.9 0.294 AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1)
At1g75830 17.3 99.9 0.174 LCR67
At3g26320 17.3 99.9 0.549 CYP71B36
At5g46730 16.9 99.9 0.552 glycine-rich protein
At1g47980 16.7 99.9 0.214 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB
At3g14480 16.7 99.9 0.239 glycine/proline-rich protein
At1g73620 16.6 99.9 0.323 thaumatin-like protein, putative / pathogenesis-related protein, putative
At4g02130 16.5 99.9 0.647 GATL6
At1g64130 16.2 99.9 0.291 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At3g58390 16.2 99.9 0.321 eukaryotic release factor 1 family protein / eRF1 family protein
At2g25890 16.1 99.9 0.168 glycine-rich protein / oleosin
At4g08090 15.9 99.9 0.219 transposable element gene
At3g48030 15.5 99.9 0.664 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein
At3g32160 15.3 99.9 0.544 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At1g67910 15.2 99.9 0.537 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P
At4g25790 14.9 99.9 0.312 allergen V5/Tpx-1-related family protein
At1g63030 14.6 99.9 0.383 ddf2 (DWARF AND DELAYED FLOWERING 2)
At5g23840 14.6 99.9 0.274 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 45.0 99.9 5/5 1 - - - - 140 187
GC-MS unknown 28.2 99.8 5/5 1 - - - - 105 120
GC-MS unknown 26.9 99.7 5/5 2 - - - - 147 221 281
GC-MS gamma-Tocopherol 21.0 99.6 5/5 2 KPC01439 C02483 C28H48O2 416.3654308 222 488 263
GC-MS unknown 15.8 99.3 5/5 1 - - - - 147 355 221 281
GC-MS unknown 14.1 99.2 5/5 2 - - - - 143 129 199 326 283
GC-MS unknown 12.9 99.1 5/5 1 - - - - 83 97
GC-MS unknown 12.4 99.0 5/5 2 - - - - 147 129 103 191 217
GC-MS unknown 12.0 99.0 5/5 2 - - - - 147 281 133 221






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