RnR The prediction of regulatory relationships associated with At1g04250

QueryAt1g04250
DescriptionAXR3 (AUXIN RESISTANT 3)
RAFL IDpda03374
C.R.C
R.O.X.L.10/10 lines
P.O.X. 34.8

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Maroonover-expressed gene
Orangegene
Yellowmetabolite, lipid mode, GC-MS
Cyanmetabolite, polar mode, GC-MS
Bluemetabolite, LC-MS
Greenmetabolite, negative mode, CE-MS
Limegreenmetabolite, positive mode, CE-MS



Candidate elements regulated by At1g04250

Genes

Regulated gene Std.R. P.R. Co-X Gene name/alias
At1g10810 213.9 100.0 0.451 aldo/keto reductase family protein
At1g66690 157.1 100.0 0.293 S-adenosyl-L-methionine:carboxyl methyltransferase family protein
At1g26420 115.3 100.0 0.160 FAD-binding domain-containing protein
At1g21120 108.3 100.0 0.303 O-methyltransferase, putative
At1g26380 108.3 100.0 0.173 FAD-binding domain-containing protein
At1g14540 71.7 100.0 0.129 anionic peroxidase, putative
At3g13610 67.4 100.0 0.519 oxidoreductase, 2OG-Fe(II) oxygenase family protein
At1g55560 64.3 100.0 0.013 sks14 (SKU5 Similar 14)
At1g51890 63.7 100.0 0.283 leucine-rich repeat protein kinase, putative
At4g00680 62.0 100.0 0.489 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)
At2g29100 61.1 100.0 0.117 ATGLR2.9
At1g21130 59.9 100.0 0.349 O-methyltransferase, putative
At2g11165 57.3 100.0 0.041 transposable element gene
At1g51915 56.6 100.0 0.085 cryptdin protein-related
At4g14630 54.0 100.0 0.295 GLP9 (GERMIN-LIKE PROTEIN 9)
At1g26390 46.3 100.0 0.270 FAD-binding domain-containing protein
At5g60760 43.0 100.0 0.188 2-phosphoglycerate kinase-related
At5g40010 42.7 100.0 0.285 AATP1 (AAA-ATPase 1)
At5g39630 42.6 100.0 0.214 vesicle transport v-SNARE family protein
At4g15120 35.6 100.0 0.531 VQ motif-containing protein
At1g30700 31.2 100.0 0.411 FAD-binding domain-containing protein
At3g51330 31.1 100.0 0.521 aspartyl protease family protein
At1g21100 29.9 100.0 0.479 O-methyltransferase, putative
At2g30770 29.6 100.0 0.107 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)
At1g67270 29.3 100.0 0.117 -
At1g26410 28.5 100.0 0.244 FAD-binding domain-containing protein
At2g13810 27.5 100.0 0.311 ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)
At2g03190 26.9 99.9 0.008 ASK16 (ARABIDOPSIS SKP1-LIKE 16)
At5g44480 26.6 99.9 0.539 DUR (DEFECTIVE UGE IN ROOT)
At1g19250 26.5 99.9 0.222 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)
At4g03440 26.3 99.9 0.287 ankyrin repeat family protein
At1g02360 26.1 99.9 0.509 chitinase, putative
At2g35980 25.7 99.9 0.234 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)
At5g08240 23.7 99.9 0.379 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB
At5g20820 23.6 99.9 0.466 auxin-responsive protein-related
At1g35230 23.5 99.9 0.159 AGP5 (ARABINOGALACTAN-PROTEIN 5)
At1g57906 23.3 99.9 0.095 -
At3g18250 22.7 99.9 0.201 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO
At3g13790 22.6 99.9 0.627 ATBFRUCT1
At2g39530 22.3 99.9 0.455 integral membrane protein, putative
At5g19240 22.0 99.9 0.386 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At1g37110 21.8 99.9 0.046 transposable element gene
At2g43570 21.7 99.9 0.252 chitinase, putative
At4g02280 21.0 99.9 0.221 SUS3 (sucrose synthase 3)
At4g36110 20.7 99.9 0.458 auxin-responsive protein, putative
At2g46750 20.5 99.9 0.479 FAD-binding domain-containing protein
At4g26140 20.5 99.9 0.371 BGAL12 (beta-galactosidase 12)
At2g40610 20.2 99.9 0.566 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)
At5g45070 20.1 99.9 0.406 AtPP2-A8 (Phloem protein 2-A8)
At5g43110 19.9 99.9 0.064 APUM14 (Arabidopsis Pumilio 14)
At1g71030 18.6 99.9 0.398 MYBL2 (ARABIDOPSIS MYB-LIKE 2)
At2g28755 18.6 99.9 0.136 UDP-D-glucuronate carboxy-lyase-related
At1g02940 18.3 99.9 0.163 GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)
At2g43520 18.3 99.9 0.180 ATTI2
At1g55200 18.1 99.9 0.272 protein kinase family protein
At4g30060 18.0 99.9 0.595 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB
At2g37430 17.8 99.9 0.095 zinc finger (C2H2 type) family protein (ZAT11)
At5g39580 17.7 99.9 0.328 peroxidase, putative
At5g22270 17.5 99.9 0.364 F:molecular_function unknown;P:biological_process unknown;C:unknown;P
At5g46350 17.3 99.9 0.318 WRKY8
At2g42950 16.9 99.9 0.404 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO
At3g26690 16.9 99.9 0.566 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)
At3g48640 16.8 99.9 0.133 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P
At4g03550 16.8 99.9 0.574 ATGSL05 (GLUCAN SYNTHASE-LIKE 5)
At4g37010 16.8 99.9 0.580 caltractin, putative / centrin, putative
At4g22070 16.5 99.9 0.543 WRKY31
At4g39670 16.2 99.9 0.137 glycolipid binding / glycolipid transporter
At2g18690 16.1 99.9 0.383 F:molecular_function unknown;P:biological_process unknown;C:membrane;PB
At4g18990 16.0 99.9 0.289 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
At2g43000 15.9 99.9 0.388 anac042 (Arabidopsis NAC domain containing protein 42)
At3g29600 15.8 99.9 0.130 transposable element gene
At4g20000 15.7 99.9 0.274 VQ motif-containing protein
At5g58840 15.7 99.9 0.032 subtilase family protein
At1g78410 15.4 99.9 0.154 VQ motif-containing protein
At3g53150 15.4 99.9 0.374 UGT73D1 (UDP-glucosyl transferase 73D1)
At1g02920 15.2 99.9 0.441 GSTF7
At2g36440 15.2 99.9 0.020 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P
At2g15120 15.0 99.9 0.358 -
At1g45090 14.8 99.9 0.099 transposable element gene
At4g35070 14.8 99.9 0.305 -
At5g15130 14.7 99.9 0.495 WRKY72
At4g03510 14.6 99.9 0.558 RMA1
At5g65600 14.6 99.9 0.204 legume lectin family protein / protein kinase family protein

Metabolites

Inst. Type Regulated metabolite Std.R. P.R. D.F. D.R. KaPPA-View KEGG Formula Mass Measured mass
GC-MS unknown 23.1 99.7 5/5 1 - - - - 83
GC-MS unknown 16.3 99.4 5/5 1 - - - - 119 91 193 149 239
GC-MS unknown 12.9 99.1 5/5 2 - - - - 117 189 147 133
GC-MS unknown 10.8 98.8 3/5 1 - - - - 91 83 121 148 161
GC-MS unknown 9.0 98.3 5/5 3 - - - - 204 296 331 173 103
LC-MS Glutathione (oxidized form) 15.8 99.2 1/5 1.5 KPC00857 C00127 C20H32N6O12S2 612.1519625 613.1690
LC-MS unknown 8.7 98.5 1/5 1.1 - - - 464.1038 465.1116
LC-MS unknown 7.8 98.3 1/5 1.3 - - - 147.0516 148.0594
LC-MS unknown 6.9 98.1 1/5 1.0 - - - 407.0849 408.0927
LC-MS unknown 5.4 97.5 1/5 1.2 - - - 606.1820 607.1898
CE-MS unknown 18.5 99.5 5/5 1.5 - - - 227 228
CE-MS unknown 11.6 99.1 5/5 1.2 - - - 102 103
CE-MS unknown 10.7 99.0 5/5 1.4 - - - 168 167
CE-MS unknown 8.0 98.6 5/5 1.3 - - - 208 209
CE-MS unknown 7.8 98.6 5/5 1.3 - - - 155 156






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