| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 52.8 | 100.0 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes |  |
| 19.2 | 99.3 | GSM320471 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 15.0 | 98.9 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 11.3 | 98.5 | GSM320468 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.1 | 98.4 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.8 | 98.3 | GSM320472 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.5 | 98.3 | GSM205421 | B73 19 DAP endosperm tissue biological replicate 1 | GSE8278 | Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP | |
| 7.2 | 97.8 | GSM253281 | ZM_8d_SG200_3Alu_II | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| 5.9 | 97.3 | GSM258207 | Wf9 11-day seedling aerial tissue biological replicate 3 | GSE10237 | Gene expression variation among eight maize inbreds | |
| 5.9 | 97.3 | GSM206297 | Lower pulvinus 30 min total RNA biorep 1 | GSE8320 | Transcriptional and translational gene regulation in the maize pulvinus | |
| 5.8 | 97.2 | GSM202320 | B73 19 day after pollination embryo tissue, biological replicate 3 | GSE8179 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data | |
| 5.5 | 97.1 | GSM258187 | B84xB73 11-day seedling aerial tissue biological replicate 2 | GSE10236 | Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis | |
| 5.5 | 97.1 | GSM258195 | B37xB73 11-day seedling aerial tissue biological replicate 3 | GSE10236 | Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis | |
| 4.9 | 96.7 | GSM320466 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.7 | 96.5 | GSM320465 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.4 | 96.2 | GSM202298 | B73 immature ear tissue, biological replicate 2 | GSE8176 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data | |
| 4.1 | 95.9 | GSM205420 | Mo17 19 DAP endosperm tissue biological replicate 1 | GSE8278 | Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP | |
| 3.8 | 95.5 | GSM253278 | ZM_8d_SG200_3inf_II | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| 3.1 | 94.3 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.1 | 94.3 | GSM202316 | Mo17xB73 19 day after pollination embryo tissue, biological replicate 2 | GSE8179 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data | |
