Specifically-expressed experiments

Gene ID At5g66700
Gene name HB53
Functional description Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
380.6100.0GSM184524Stele root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
336.5100.0GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
255.6100.0GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
222.7100.0GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
196.7100.0GSM184522Stele root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
149.299.9GSM184527Stele root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
137.699.9GSM184523Stele root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
125.199.9GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
102.799.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
101.399.9GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
84.699.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
79.899.9GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
72.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
69.699.9GSM184528Stele root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
68.199.9GSM184529Stele root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
56.099.8GSM131289AtGen_6-2221_Osmoticstress-Roots-1.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
49.599.8GSM131297AtGen_6-2421_Osmoticstress-Roots-6.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
47.399.8GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
46.899.8GSM131429AtGen_6-8423_Woundingstress-Roots-6.0h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
44.699.8GSM131302AtGen_6-2522_Osmoticstress-Roots-12.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
41.099.8GSM184525Stele root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
40.399.8GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
36.599.7GSM131298AtGen_6-2422_Osmoticstress-Roots-6.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
35.699.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.199.7GSM184504Pericycle root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.099.7GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.999.7GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.399.7GSM131445AtGen_6-9121_Heatstress-Roots-0.5h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
30.499.7GSM131301AtGen_6-2521_Osmoticstress-Roots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
28.699.7GSM131309AtGen_6-3121_Saltstress-Roots-0.5h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
28.299.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.799.7GSM131310AtGen_6-3122_Saltstress-Roots-0.5h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
27.299.7GSM184532Protoplasted root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.099.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.399.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.599.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.299.6GSM131326AtGen_6-3522_Saltstress-Roots-12.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
24.999.6GSM131349AtGen_6-4421_Droughtstress-Roots-6.0h_Rep1GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
24.799.6GSM131245AtGen_6-0821_Control-Roots-4.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
24.699.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.199.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.199.6GSM131465AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
23.999.6GSM131374AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
23.699.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.399.6GSM131466AtGen_6-9522_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
23.299.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.199.6GSM131314AtGen_6-3222_Saltstress-Roots-1.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
22.999.6GSM131366AtGen_6-5222_Genotoxicstress-Roots-1.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
22.899.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.699.6GSM131446AtGen_6-9122_Heatstress-Roots-0.5h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
22.599.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.199.6GSM184485Epidermis&Cortex root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.099.6GSM131294AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
22.099.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.099.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.899.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.899.6GSM131390AtGen_6-7122_UV-Bstress-Roots-0.5h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
21.699.6GSM131454AtGen_6-9322_Heatstress-Roots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
21.399.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.099.6GSM131285AtGen_6-2121_Osmoticstress-Roots-0.5h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
20.499.6GSM184487Epidermis&Cortex root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.299.6GSM131293AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
19.799.6GSM184496Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.399.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.499.5GSM131241AtGen_6-0321_Control-Roots-3.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
17.999.5GSM131426AtGen_6-8325_Woundingstress-Roots-3.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
17.999.5GSM131286AtGen_6-2122_Osmoticstress-Roots-0.5h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
17.399.5GSM131346AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
17.099.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.099.5GSM131350AtGen_6-4422_Droughtstress-Roots-6.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
16.999.5GSM131394AtGen_6-7222_UV-Bstress-Roots-1.0h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
16.699.5GSM131229AtGen_6-0721_Control-Roots-0.25h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
16.499.5GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.999.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.799.5GSM131453AtGen_6-9321_Heatstress-Roots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
15.799.5GSM131393AtGen_6-7221_UV-Bstress-Roots-1.0h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
15.599.5GSM184486Epidermis&Cortex root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.599.5GSM184535Protoplasted root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.099.4GSM131389AtGen_6-7121_UV-Bstress-Roots-0.5h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
14.699.4GSM131365AtGen_6-5221_Genotoxicstress-Roots-1.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
14.499.4GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.299.4GSM218589Protoplasted root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.999.4GSM131378AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
13.899.4GSM131269AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
13.599.4GSM131362AtGen_6-5122_Genotoxicstress-Roots-0.5h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
13.499.4GSM184505Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.299.4GSM131438AtGen_6-8622_Woundingstress-Roots-24.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
13.299.4GSM131361AtGen_6-5121_Genotoxicstress-Roots-0.5h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
12.699.3GSM131242AtGen_6-0322_Control-Roots-3.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
12.699.3GSM131305AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
12.599.3GSM131233AtGen_6-0121_Control-Roots-0.5h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
12.599.3GSM131345AtGen_6-4321_Droughtstress-Roots-3.0h_Rep1GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
12.499.3GSM131469AtGen_6-9621_Heatstress(3h)+21hrecovery-Roots-24.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
11.899.3GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
11.799.3GSM131253AtGen_6-0521_Control-Roots-12.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
11.799.3GSM131341AtGen_6-4221_Droughtstress-Roots-1.0h_Rep1GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
11.799.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.699.3GSM131437AtGen_6-8621_Woundingstress-Roots-24.0h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
11.599.3GSM131377AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
11.299.2GSM131405AtGen_6-7521_UV-Bstress-Roots-12.0h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
11.299.2GSM131246AtGen_6-0822_Control-Roots-4.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
11.199.2GSM131422AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
10.799.2GSM131342AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
10.799.2GSM184495Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.599.2GSM131249AtGen_6-0421_Control-Roots-6.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
10.199.2GSM131417AtGen_6-8124_Woundingstress-Roots-0.5h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
10.199.2GSM131258AtGen_6-0622_Control-Roots-24.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
9.499.1GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
9.299.1ArrayExpressE-MEXP-148-raw-cel-350529179---
9.099.1GSM131373AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
8.999.0GSM131313AtGen_6-3221_Saltstress-Roots-1.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
8.999.0GSM131257AtGen_6-0621_Control-Roots-24.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
8.799.0GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO



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