Specifically-expressed experiments

Gene ID At5g62165
Gene name AGL42 (AGAMOUS LIKE 42)
Functional description Encodes a MADS box transcription factor. Expressed in quiescent center.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
106.899.9GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
98.699.9GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
85.299.9GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
83.999.9GSM242955Steroid day 1 (day1D1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
72.199.9GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
66.999.8GSM242956Steroid day 1 (day1D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
60.099.8GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
59.499.8GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
56.499.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
55.799.8GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
51.899.8GSM242953Mock day 1 (day1E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
51.399.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
50.099.8GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
41.999.8GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
39.399.8GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
35.899.7GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
34.999.7ArrayExpressE-MEXP-682-raw-cel-922397645---
31.699.7GSM242964Steroid day 7 (day7D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
30.499.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.899.7GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
29.499.7GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
29.199.7GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
25.399.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.599.6GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
24.299.6GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
23.799.6ArrayExpressE-ATMX-31-raw-cel-1516947984---
23.199.6GSM242963Steroid day 7 (day7D1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
22.599.6GSM290758root - 01% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
21.699.6ArrayExpressE-MEXP-682-raw-cel-922397679---
21.099.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.999.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.999.6ArrayExpressE-ATMX-31-raw-cel-1516948018---
20.199.6GSM62705arf6 arf8_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
19.099.5GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.799.5GSM131541ATGE_26_BGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
18.299.5ArrayExpressE-MEXP-682-raw-cel-922397662---
18.099.5ArrayExpressE-ATMX-31-raw-cel-1516948001---
17.999.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.999.5GSM291024root - 08% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
16.699.5GSM62701arf6/arf6 ARF8/arf8_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
16.399.5ArrayExpressE-MEXP-682-raw-cel-922397594---
16.199.5ArrayExpressE-MEXP-682-raw-cel-922397713---
15.799.5GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
15.099.4GSM131542ATGE_26_CGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
14.899.4GSM142633MC002_ATH1_A4.2-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
14.799.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.699.4GSM131540ATGE_26_AGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
14.399.4GSM142634MC002_ATH1_A4.3-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
14.299.4ArrayExpressE-MEXP-148-raw-cel-350529179---
13.899.4GSM291119root - 21% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
13.899.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.899.4GSM131560ATGE_9_CGSE5631AtGenExpress: Developmental series (roots)Link to GEO
13.899.4GSM131559ATGE_9_BGSE5631AtGenExpress: Developmental series (roots)Link to GEO
13.899.4GSM142632MC002_ATH1_A4.1-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
13.699.4ArrayExpressE-MEXP-682-raw-cel-922397696---
13.299.4GSM260883Yap_A2-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathwaysLink to GEO
13.299.4GSM142640MC002_ATH1_A6.3-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
13.199.4GSM131671ATGE_48_BGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
13.099.4GSM131672ATGE_48_CGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
13.099.4ArrayExpressE-TABM-63-raw-cel-681136835---
12.899.3GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
12.899.3GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.699.3GSM133720Deeken_A-2-Deeke-Inf_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
12.499.3GSM260882Yap_A1-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathwaysLink to GEO
12.499.3GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
12.399.3GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.299.3GSM131558ATGE_9_AGSE5631AtGenExpress: Developmental series (roots)Link to GEO
12.199.3ArrayExpressE-MEXP-148-raw-cel-350529268---
11.999.3ArrayExpressE-MEXP-1592-raw-cel-1617526856---
11.899.3ArrayExpressE-MEXP-682-raw-cel-922397611---
11.899.3GSM142733CH001_ATH1_A012-Hampt-c1cGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
11.799.3ArrayExpressE-MEXP-1592-raw-cel-1617526888---
11.599.3ArrayExpressE-MEXP-1592-raw-cel-1617526920---
11.499.3GSM133752Turner_A-6-Turne-WT-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
11.499.3GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.299.2ArrayExpressE-MEXP-1592-raw-cel-1617526880---
11.199.2GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.999.2GSM260881Yap_A2-AMFGSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathwaysLink to GEO
10.899.2GSM131670ATGE_48_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
10.899.2ArrayExpressE-MEXP-828-raw-cel-1156922891---
10.799.2ArrayExpressE-MEXP-1592-raw-cel-1617526952---
10.799.2GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.599.2GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.399.2GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.199.2GSM62697Columbia_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
10.099.2GSM47019Ler 9GSE2473Small RNA biogenesis mutantsLink to GEO
9.999.1ArrayExpressE-MEXP-1592-raw-cel-1617526824---
9.999.1GSM142731CH001_ATH1_A010-Hampt-akcGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
9.899.1GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.899.1GSM131619ATGE_54_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.799.1GSM142639MC002_ATH1_A6.2-dubos-5kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.799.1GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thalianaLink to GEO
9.799.1GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.699.1GSM133892Schroeder_1-6_JS43-control-96h_Rep1_ATH1GSE5744Response to potassium starvation in rootsLink to GEO
9.599.1ArrayExpressE-TABM-63-raw-cel-681136797---
9.399.1GSM133891Schroeder_1-3_JS45-control-48h_Rep1_ATH1GSE5744Response to potassium starvation in rootsLink to GEO
9.299.1GSM131465AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
9.299.1ArrayExpressE-MEXP-828-raw-cel-1156922987---
9.299.1GSM131667ATGE_47_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
9.199.1GSM142626MC002_ATH1_A2.1-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.099.1GSM131675ATGE_49_CGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
9.099.1GSM131669ATGE_47_CGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
9.099.1GSM133748Turner_A-2-Turne-Mut-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
8.999.0GSM142657MC002_ATH1_A12.2-dubos-arhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.999.0GSM133718Urwin_A-2-Urwin-Inf_SLDGSE5724Plant gene expression associated with susceptibility to nematodesLink to GEO
8.999.0GSM131673ATGE_49_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
8.999.0ArrayExpressE-MEXP-148-raw-cel-350529355---
8.899.0ArrayExpressE-TABM-63-raw-cel-681137230---
8.899.0ArrayExpressE-MEXP-828-raw-cel-1156922368---
8.799.0GSM157315Hammond_3-5_Potassium-starved-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
8.799.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.799.0GSM142656MC002_ATH1_A12.1-dubos-arhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.799.0GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.799.0GSM142628MC002_ATH1_A2.3-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO



Back to the CoP portal site

Back to the KAGIANA project homepage