Specifically-expressed experiments

Gene ID At5g59820
Gene name RHL41 (RESPONSIVE TO HIGH LIGHT 41)
Functional description Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
133.899.9GSM184502Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
130.099.9GSM218586Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
88.699.9GSM218585Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
87.399.9GSM184508Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
84.699.9GSM184499Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
83.299.9GSM184505Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
68.899.9ArrayExpressE-MEXP-807-raw-cel-1173273223---
67.199.8GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
66.299.8GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
65.299.8GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
63.199.8GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
62.099.8ArrayExpressE-MEXP-807-raw-cel-1173273252---
58.599.8GSM184498Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
57.499.8GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
54.799.8GSM184501Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
54.399.8GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
53.999.8ArrayExpressE-MEXP-807-raw-cel-1173273196---
53.299.8GSM184521Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
49.399.8GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
46.499.8GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
46.399.8GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
46.199.8GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
44.399.8GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
43.599.8ArrayExpressE-MEXP-807-raw-cel-1173273144---
41.299.8GSM184527Stele root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
41.099.8ArrayExpressE-MEXP-807-raw-cel-1173273060---
40.799.8GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
39.799.8ArrayExpressE-MEXP-807-raw-cel-1173273088---
39.399.8ArrayExpressE-MEXP-807-raw-cel-1173273116---
38.799.8GSM184488Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.399.8GSM184493Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.399.8GSM218587Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.699.7ArrayExpressE-MEXP-807-raw-cel-1173273170---
35.699.7GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
34.699.7GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
34.199.7GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
33.699.7GSM184909Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
32.899.7GSM184492Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.199.7GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
31.599.7GSM266665Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
31.199.7GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.999.7GSM184899Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.599.7GSM184496Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.599.7GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.499.7GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.199.7GSM184524Stele root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.199.7GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.099.7GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.499.7GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
29.499.7GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
28.099.7GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.899.7GSM184504Pericycle root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.899.7GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
27.399.7GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
27.099.7GSM184500Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.799.7GSM184487Epidermis&Cortex root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.799.7GSM266676Arabidopsis, root cells, stele, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
26.399.7GSM266673Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
26.099.7GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
25.999.7GSM265414Arabidopsis, root cells, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
25.999.7GSM184634Arabidopsis, root cells, 140 mM NaCl, replicate 1GSE7636Expression analysis of the effect of protoplasting and FACS sorting in rootsLink to GEO
25.299.6GSM184907Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
25.299.6GSM184494Endodermis&Pericycle root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.999.6GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.799.6GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
24.699.6GSM184486Epidermis&Cortex root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.399.6GSM184915Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
24.399.6GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
23.999.6GSM184495Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.899.6GSM184908Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
23.699.6GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
23.699.6GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
23.699.6ArrayExpressE-MEXP-807-raw-cel-1173272948---
23.399.6GSM184507Pericycle root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.999.6GSM184491Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.699.6GSM184920Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
21.299.6GSM184898Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
21.199.6GSM184523Stele root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.199.6GSM184510Pericycle root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.699.6ArrayExpressE-MEXP-1443-raw-cel-1581869745---
19.599.6GSM184897Arabidopsis, root cells, cortex, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.499.5ArrayExpressE-MEXP-98-raw-cel-320188914---
18.499.5GSM266674Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
18.399.5GSM266672Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
17.899.5GSM184490Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.899.5ArrayExpressE-MEXP-98-raw-cel-320188969---
17.699.5GSM184506Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.599.5ArrayExpressE-MEXP-98-raw-cel-320188749---
17.399.5ArrayExpressE-MEXP-1443-raw-cel-1581869921---
16.899.5GSM184919Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.799.5GSM266675Arabidopsis, root cells, stele, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
16.599.5GSM184635Arabidopsis, root cells, 140 mM NaCl, replicate 2GSE7636Expression analysis of the effect of protoplasting and FACS sorting in rootsLink to GEO
16.599.5ArrayExpressE-MEXP-1443-raw-cel-1581869803---
15.999.5GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.599.5GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.499.5ArrayExpressE-MEXP-1443-raw-cel-1581869863---
14.999.4GSM266677Arabidopsis, root cells, stele, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
14.999.4GSM184921Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.899.4GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
14.699.4GSM184485Epidermis&Cortex root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.699.4GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.599.4GSM133812Diamond_A-1-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
14.499.4GSM133885Zarka_4-4_MT-P15-8B_Rep2_ATH1GSE5742Response to ZAT12 expressionLink to GEO
14.399.4GSM184489Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.299.4GSM184529Stele root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.299.4GSM265416Arabidopsis, root cells, -Fe, replicate 3GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
14.099.4GSM266671Arabidopsis, root cells, cortex, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
13.699.4GSM133810Diamond_A-3-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
13.599.4GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.499.4ArrayExpressE-MEXP-546-raw-cel-863289424---
13.399.4GSM133884Zarka_4-3_MT-P15-15A_Rep1_ATH1GSE5742Response to ZAT12 expressionLink to GEO
13.399.4ArrayExpressE-MEXP-546-raw-cel-863289476---
12.699.3GSM184528Stele root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.499.3GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
12.499.3GSM133968Birnbaum_1-19_LRC-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
12.499.3GSM133811Diamond_A-4-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
12.499.3GSM184526Stele root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.399.3GSM133808Diamond_A-1-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
12.299.3GSM2454949 hr Hypoxia Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
11.999.3GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
11.999.3ArrayExpressE-MEXP-546-raw-cel-863289532---
11.899.3GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
11.799.3GSM133989Birnbaum_1-22_gl2-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
11.699.3GSM184553Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.599.3GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.399.3GSM133813Diamond_A-2-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
10.999.2GSM2454749 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
10.899.2GSM133809Diamond_A-2-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
10.499.2GSM133814Diamond_A-3-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
10.399.2GSM184903Arabidopsis, root cells, stele, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.999.1GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
9.799.1GSM133969Birnbaum_1-20_LRC-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
9.799.1GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.699.1GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.599.1GSM266664Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.599.1GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.399.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.299.1GSM184522Stele root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.299.1GSM133815Diamond_A-4-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
9.099.1GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.099.1GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
8.899.0GSM2454849 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
8.799.0GSM184482Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO



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