Specifically-expressed experiments

Gene ID	At5g57090
Gene name	EIR1 (ETHYLENE INSENSITIVE ROOT 1)
Functional description	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
132.7	99.9	GSM266664	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
101.8	99.9	GSM184484	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
93.0	99.9	GSM266663	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
91.4	99.9	GSM266662	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
68.9	99.9	GSM184895	Arabidopsis, root cells, cortex, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
62.4	99.8	GSM184908	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
59.5	99.8	GSM265421	Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
59.3	99.8	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
59.0	99.8	GSM184477	Lateral Root Cap root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
57.7	99.8	GSM266665	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
55.5	99.8	GSM184478	Lateral Root Cap root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
51.5	99.8	GSM133975	Birnbaum_1-5_StageI-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
50.9	99.8	GSM265429	Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
49.6	99.8	GSM265419	Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
46.2	99.8	GSM265427	Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
43.1	99.8	GSM265420	Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
42.2	99.8	GSM265428	Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
42.1	99.8	GSM184488	Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
41.3	99.8	GSM133979	Birnbaum_1-9_StageII-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
40.0	99.8	GSM184483	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
40.0	99.8	GSM184890	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
39.5	99.8	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
38.5	99.8	GSM184896	Arabidopsis, root cells, cortex, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
38.1	99.8	GSM184891	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
37.9	99.8	GSM184481	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
37.1	99.7	GSM184493	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
33.9	99.7	GSM265426	Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
32.4	99.7	GSM184490	Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
32.3	99.7	GSM184487	Epidermis&Cortex root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.7	99.7	GSM184889	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
31.6	99.7	GSM266669	Arabidopsis, root cells, cortex, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
29.8	99.7	GSM184909	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
29.6	99.7	GSM184897	Arabidopsis, root cells, cortex, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
29.4	99.7	GSM252679	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
27.6	99.7	GSM265411	Arabidopsis, whole roots, -Fe, replicate 1	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
27.5	99.7	GSM265416	Arabidopsis, root cells, -Fe, replicate 3	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
27.5	99.7	GSM184480	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
26.7	99.7	GSM133980	Birnbaum_1-10_StageII-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
26.2	99.7	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
25.6	99.7	GSM133989	Birnbaum_1-22_gl2-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
25.4	99.6	GSM133974	Birnbaum_1-4_StageI-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
25.3	99.6	GSM184832	Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
25.0	99.6	GSM265415	Arabidopsis, root cells, -Fe, replicate 2	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
25.0	99.6	GSM184834	Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4	GSE7639	Expression analysis of root developmental zones after treatment with salt
24.9	99.6	GSM133977	Birnbaum_1-7_StageI-4_Rep4_ATH1	GSE5749	A gene expression map of the Arabidopsis root
24.3	99.6	GSM184839	Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
23.0	99.6	GSM252690	Section of Root from 270 mm to 340 mm harvested immediately rep1	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
23.0	99.6	GSM265414	Arabidopsis, root cells, -Fe, replicate 1	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
22.6	99.6	GSM265413	Arabidopsis, whole roots, -Fe, replicate 3	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
22.5	99.6	GSM252691	Section of Root from 270 mm to 340 mm harvested immediately rep2	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
22.3	99.6	GSM265412	Arabidopsis, whole roots, -Fe, replicate 2	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
21.8	99.6	GSM184907	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
21.2	99.6	GSM184479	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
21.1	99.6	GSM265418	Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
21.0	99.6	GSM133970	Birnbaum_1-21_LRC-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
20.6	99.6	GSM133969	Birnbaum_1-20_LRC-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
20.4	99.6	GSM184831	Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
20.1	99.6	GSM252667	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep1	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
19.7	99.6	GSM133120	RIKEN-YAMAUCHI2B	GSE5687	AtGenExpress: Different temperature treatment of seeds
19.4	99.6	GSM184840	Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
18.9	99.5	GSM184893	Arabidopsis, root cells, columella root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
18.8	99.5	GSM184833	Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 3	GSE7639	Expression analysis of root developmental zones after treatment with salt
17.9	99.5	GSM133976	Birnbaum_1-6_StageI-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
17.6	99.5	GSM184510	Pericycle root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.6	99.5	GSM252665	Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep3	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
16.3	99.5	GSM133978	Birnbaum_1-8_StageII-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
16.2	99.5	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.6	99.5	GSM252692	Section of Root from 270 mm to 340 mm harvested immediately rep3	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
15.3	99.4	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
15.0	99.4	GSM265472	Arabidopsis, whole roots, -Fe, 48 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
15.0	99.4	GSM184519	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.9	99.4	GSM265471	Arabidopsis, whole roots, -Fe, 48 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
14.7	99.4	GSM184507	Pericycle root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.1	99.4	GSM252686	Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep3	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
13.9	99.4	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.8	99.4	GSM184926	Arabidopsis, whole roots, standard conditions, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
13.8	99.4	GSM184933	Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
13.8	99.4	GSM252684	Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep1	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
13.3	99.4	GSM184516	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.2	99.4	GSM133991	Birnbaum_1-24_gl2-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
12.6	99.3	GSM133968	Birnbaum_1-19_LRC-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
12.6	99.3	GSM266668	Arabidopsis, root cells, columella root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.4	99.3	GSM184517	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.2	99.3	GSM252685	Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep2	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
11.9	99.3	GSM291021	root - 08% oxygen - 30min - C	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
11.9	99.3	GSM133957	Fukuda_1-2_0B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.9	99.3	GSM184632	Arabidopsis, whole roots, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
11.7	99.3	GSM184841	Arabidopsis, root, longitudinal zone 2, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
11.7	99.3	GSM184925	Arabidopsis, whole roots, standard conditions, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
11.7	99.3	GSM184835	Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5	GSE7639	Expression analysis of root developmental zones after treatment with salt
11.5	99.3	GSM184489	Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.5	99.3	GSM226544	Slice2JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.4	99.3	GSM252678	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep4	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
11.3	99.3	GSM252672	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep2	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
11.2	99.2	GSM184482	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.1	99.2	GSM184521	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM133981	Birnbaum_1-11_StageII-4_Rep4_ATH1	GSE5749	A gene expression map of the Arabidopsis root
11.0	99.2	GSM291019	root - 08% oxygen - 2h - C	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.8	99.2	GSM226543	Slice1JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.6	99.2	ArrayExpress	E-MEXP-849-raw-cel-1181981006	-	-	-
10.5	99.2	GSM252670	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep4	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
10.2	99.2	GSM252682	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep4	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
10.1	99.2	GSM252671	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep1	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
10.1	99.2	GSM184518	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.5	99.1	GSM184931	Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
9.5	99.1	ArrayExpress	E-MEXP-849-raw-cel-1181981022	-	-	-
9.4	99.1	GSM226545	Slice3JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.4	99.1	GSM218590	Protoplasted root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.3	99.1	GSM266666	Arabidopsis, root cells, columella root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.3	99.1	GSM184932	Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
9.1	99.1	GSM131398	AtGen_6-7322_UV-Bstress-Roots-3.0h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
9.1	99.1	GSM218588	Protoplasted root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.0	99.1	GSM291099	root - 21% oxygen - 2h - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.9	99.0	GSM131278	AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
8.7	99.0	GSM252676	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep2	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
8.7	99.0	GSM290762	root - 04% oxygen - 30min - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.7	99.0	GSM131462	AtGen_6-9422_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)

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