CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g54690

Gene name GAUT12 (GALACTURONOSYLTRANSFERASE 12)

Functional description Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
321.1 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
243.1 100.0 ArrayExpress E-MEXP-265-raw-cel-414618291 - - -
230.4 100.0 ArrayExpress E-MEXP-265-raw-cel-414618491 - - -
225.6 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
215.3 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
200.2 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
200.0 100.0 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
193.4 100.0 ArrayExpress E-MEXP-265-raw-cel-414618394 - - -
186.2 100.0 ArrayExpress E-MEXP-265-raw-cel-414618796 - - -
177.2 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
154.4 99.9 ArrayExpress E-MEXP-265-raw-cel-414618585 - - -
130.7 99.9 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
113.2 99.9 ArrayExpress E-MEXP-265-raw-cel-414618693 - - -
109.3 99.9 ArrayExpress E-MEXP-265-raw-cel-414617890 - - -
102.0 99.9 ArrayExpress E-MEXP-265-raw-cel-414617695 - - -
100.8 99.9 ArrayExpress E-MEXP-265-raw-cel-414617783 - - -
95.6 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
85.0 99.9 ArrayExpress E-MEXP-1451-raw-cel-1585200362 - - -
82.1 99.9 GSM27362 WT Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
72.4 99.9 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.2 99.9 GSM131660 ATGE_28_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
69.1 99.9 GSM131659 ATGE_28_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
66.6 99.8 GSM27366 lec1-1 Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
61.6 99.8 GSM131658 ATGE_28_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
56.6 99.8 GSM133750 Turner_A-4-Turne-Mut-Base2_SLD GSE5729 Role of COV in vascular patterning
55.6 99.8 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
54.4 99.8 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
51.6 99.8 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
50.3 99.8 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
49.1 99.8 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
43.3 99.8 ArrayExpress E-MEXP-285-raw-cel-440783213 - - -
38.9 99.8 GSM128785 Somerville_1-8_stem-GC7_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
38.4 99.8 ArrayExpress E-MEXP-1451-raw-cel-1585200330 - - -
33.6 99.7 GSM133749 Turner_A-3-Turne-Mut-Base1_SLD GSE5729 Role of COV in vascular patterning
33.2 99.7 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
32.9 99.7 ArrayExpress E-MEXP-285-raw-cel-440783152 - - -
32.6 99.7 GSM128786 Somerville_1-9_stem-GC8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
32.2 99.7 ArrayExpress E-MEXP-1451-raw-cel-1585200298 - - -
30.6 99.7 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
30.3 99.7 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
29.7 99.7 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
26.5 99.7 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.1 99.6 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.0 99.6 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
23.9 99.6 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
23.6 99.6 GSM266677 Arabidopsis, root cells, stele, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
17.0 99.5 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
14.4 99.4 ArrayExpress E-MEXP-265-raw-cel-414619106 - - -
14.3 99.4 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.1 99.4 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.0 99.4 GSM128788 Somerville_1-11_stem-GH8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
12.8 99.3 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.8 99.3 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.4 99.3 GSM128787 Somerville_1-10_stem-GH7_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
11.8 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.6 99.2 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6 99.1 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6 99.1 GSM184903 Arabidopsis, root cells, stele, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
9.3 99.1 GSM142656 MC002_ATH1_A12.1-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2 99.1 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.8 99.0 GSM131690 ATGE_77_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.6 99.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
321.1	100.0	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
243.1	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618291	-	-	-
230.4	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618491	-	-	-
225.6	100.0	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
215.3	100.0	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
200.2	100.0	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
200.0	100.0	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
193.4	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618394	-	-	-
186.2	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618796	-	-	-
177.2	100.0	GSM133753	Turner_A-7-Turne-WT-Base1_SLD	GSE5729	Role of COV in vascular patterning
154.4	99.9	ArrayExpress	E-MEXP-265-raw-cel-414618585	-	-	-
130.7	99.9	GSM133754	Turner_A-8-Turne-WT-Base2_SLD	GSE5729	Role of COV in vascular patterning
113.2	99.9	ArrayExpress	E-MEXP-265-raw-cel-414618693	-	-	-
109.3	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617890	-	-	-
102.0	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617695	-	-	-
100.8	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617783	-	-	-
95.6	99.9	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
85.0	99.9	ArrayExpress	E-MEXP-1451-raw-cel-1585200362	-	-	-
82.1	99.9	GSM27362	WT Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
72.4	99.9	GSM133963	Fukuda_1-8_6B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.2	99.9	GSM131660	ATGE_28_C2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
69.1	99.9	GSM131659	ATGE_28_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
66.6	99.8	GSM27366	lec1-1 Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
61.6	99.8	GSM131658	ATGE_28_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
56.6	99.8	GSM133750	Turner_A-4-Turne-Mut-Base2_SLD	GSE5729	Role of COV in vascular patterning
55.6	99.8	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
54.4	99.8	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
51.6	99.8	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
50.3	99.8	GSM184920	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
49.1	99.8	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
43.3	99.8	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
38.9	99.8	GSM128785	Somerville_1-8_stem-GC7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
38.4	99.8	ArrayExpress	E-MEXP-1451-raw-cel-1585200330	-	-	-
33.6	99.7	GSM133749	Turner_A-3-Turne-Mut-Base1_SLD	GSE5729	Role of COV in vascular patterning
33.2	99.7	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
32.9	99.7	ArrayExpress	E-MEXP-285-raw-cel-440783152	-	-	-
32.6	99.7	GSM128786	Somerville_1-9_stem-GC8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
32.2	99.7	ArrayExpress	E-MEXP-1451-raw-cel-1585200298	-	-	-
30.6	99.7	GSM184919	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
30.3	99.7	GSM266666	Arabidopsis, root cells, columella root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
29.7	99.7	GSM184893	Arabidopsis, root cells, columella root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
26.5	99.7	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.1	99.6	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.0	99.6	GSM184921	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
23.9	99.6	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
23.6	99.6	GSM266677	Arabidopsis, root cells, stele, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
17.0	99.5	GSM184634	Arabidopsis, root cells, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
14.4	99.4	ArrayExpress	E-MEXP-265-raw-cel-414619106	-	-	-
14.3	99.4	GSM266668	Arabidopsis, root cells, columella root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.1	99.4	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
14.0	99.4	GSM128788	Somerville_1-11_stem-GH8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
12.8	99.3	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.8	99.3	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.4	99.3	GSM128787	Somerville_1-10_stem-GH7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
11.8	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.6	99.2	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6	99.1	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6	99.1	GSM184903	Arabidopsis, root cells, stele, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
9.3	99.1	GSM142656	MC002_ATH1_A12.1-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2	99.1	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9	99.0	GSM131689	ATGE_77_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.8	99.0	GSM131690	ATGE_77_F	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.6	99.0	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues

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Gene ID	At5g54690
Gene name	GAUT12 (GALACTURONOSYLTRANSFERASE 12)
Functional description	Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).