CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g54250

Gene name ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)

Functional description member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.8 99.7 GSM260878 A1-Greco-Bou GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
24.9 99.6 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
19.5 99.6 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
18.1 99.5 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
16.8 99.5 GSM133823 Walters_A-02-Kruger-WL2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
15.5 99.5 ArrayExpress E-MEXP-550-raw-cel-871342472 - - -
14.9 99.4 GSM142819 SS002_ATH1_A11-smith-24h_repeat GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
14.1 99.4 ArrayExpress E-MEXP-550-raw-cel-871342463 - - -
14.0 99.4 GSM134370 St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
13.4 99.4 ArrayExpress E-ATMX-32-raw-cel-1562974409 - - -
13.3 99.4 GSM260957 A5-LLOYD-CON_REP2 GSE10326 Transcriptome analysis of pho3
12.7 99.3 GSM275638 Ler_60min GSE10876 Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
12.4 99.3 GSM133825 Walters_A-04-Kruger-WH1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
12.4 99.3 ArrayExpress E-MEXP-285-raw-cel-440782853 - - -
12.0 99.3 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
11.8 99.3 GSM133824 Walters_A-03-Kruger-WL3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.7 99.3 GSM133822 Walters_A-01-Kruger-WL1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.7 99.3 GSM142799 SS001_ATH1_A2-Smith-22 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
11.7 99.3 GSM275639 Ler_2h GSE10876 Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
11.7 99.3 GSM134362 St.Clair_1-23_363_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
11.4 99.3 GSM38669 NSPS GSE2268 Arabidopsis polysome microarray
11.1 99.2 GSM142841 MG001_ATH1_A22-Torres-7N1 GSE6176 Impact of Type III effectors on plant defense responses
11.1 99.2 ArrayExpress E-MEXP-550-raw-cel-871342481 - - -
11.1 99.2 ArrayExpress E-MEXP-449-raw-cel-676423253 - - -
11.0 99.2 ArrayExpress E-MEXP-550-raw-cel-871342454 - - -
11.0 99.2 GSM133733 Buchanan-Wollaston_A-5-bwoll-NG1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
11.0 99.2 GSM142842 MG001_ATH1_A23-Torres-7N3 GSE6176 Impact of Type III effectors on plant defense responses
10.8 99.2 GSM128670 Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.8 99.2 GSM106828 opr3_0 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.6 99.2 ArrayExpress E-MEXP-550-raw-cel-871342490 - - -
10.6 99.2 GSM133832 Walters_A-11-Kruger-MH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
10.6 99.2 GSM142843 MG001_ATH1_A24-Torres-7N6 GSE6176 Impact of Type III effectors on plant defense responses
10.6 99.2 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
10.5 99.2 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
10.5 99.2 GSM106970 opr3_OPDA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.4 99.2 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.3 99.2 GSM133734 Buchanan-Wollaston_A-6-bwoll-NG2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
10.2 99.2 ArrayExpress E-MEXP-546-raw-cel-863289641 - - -
10.1 99.2 GSM260956 A3-LLOYD-PHO_REP3 GSE10326 Transcriptome analysis of pho3
10.1 99.2 ArrayExpress E-TABM-52-raw-cel-1583683198 - - -
10.0 99.2 ArrayExpress E-MEXP-550-raw-cel-871342499 - - -
10.0 99.2 GSM106911 opr2_JA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.9 99.1 GSM297395 At.StarchSD.WTSS3.WTR2D4 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
9.8 99.1 GSM133833 Walters_A-12-Kruger-MH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
9.6 99.1 GSM133731 Buchanan-Wollaston_A-3-bwoll-C0S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
9.5 99.1 GSM142810 SS002_ATH1_A2-smith-01h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
9.3 99.1 GSM106914 opr3_JA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.3 99.1 GSM106967 opr3_OPDA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.3 99.1 GSM260958 A6-LLOYD-CON_REP3 GSE10326 Transcriptome analysis of pho3
9.3 99.1 GSM106921 opr3_OPDA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2 99.1 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
9.2 99.1 GSM128679 Underwood_1-32_Mock-Inoculum-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.1 99.1 ArrayExpress E-MEXP-550-raw-cel-871342373 - - -
9.0 99.1 GSM133735 Buchanan-Wollaston_A-7-bwoll-Ei1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
8.9 99.0 ArrayExpress E-MEXP-285-raw-cel-440783335 - - -
8.9 99.0 ArrayExpress E-MEXP-849-raw-cel-1181980838 - - -
8.9 99.0 ArrayExpress E-TABM-52-raw-cel-1583683358 - - -
8.8 99.0 GSM106912 opr3_JA 8hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.7 99.0 GSM142805 SS001_ATH1_A8-Smith-11 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
8.7 99.0 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
8.6 99.0 GSM134365 St.Clair_1-26_371_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
8.6 99.0 GSM106966 opr3_OPDA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.8	99.7	GSM260878	A1-Greco-Bou	GSE10322	Higher order transcriptional regulation conferred by the bountiful gain of function mutant
24.9	99.6	GSM260879	A2-Greco-WT	GSE10322	Higher order transcriptional regulation conferred by the bountiful gain of function mutant
19.5	99.6	GSM133826	Walters_A-05-Kruger-WH2_REP2	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
18.1	99.5	GSM133827	Walters_A-06-Kruger-WH3_REP3	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
16.8	99.5	GSM133823	Walters_A-02-Kruger-WL2_REP2	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
15.5	99.5	ArrayExpress	E-MEXP-550-raw-cel-871342472	-	-	-
14.9	99.4	GSM142819	SS002_ATH1_A11-smith-24h_repeat	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
14.1	99.4	ArrayExpress	E-MEXP-550-raw-cel-871342463	-	-	-
14.0	99.4	GSM134370	St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1	GSE5753	Expression Level Polymorphism Project (ELP) - Cvi-1
13.4	99.4	ArrayExpress	E-ATMX-32-raw-cel-1562974409	-	-	-
13.3	99.4	GSM260957	A5-LLOYD-CON_REP2	GSE10326	Transcriptome analysis of pho3
12.7	99.3	GSM275638	Ler_60min	GSE10876	Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
12.4	99.3	GSM133825	Walters_A-04-Kruger-WH1_REP1	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
12.4	99.3	ArrayExpress	E-MEXP-285-raw-cel-440782853	-	-	-
12.0	99.3	GSM133737	Buchanan-Wollaston_A-9-bwoll-Co1_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
11.8	99.3	GSM133824	Walters_A-03-Kruger-WL3_REP3	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.7	99.3	GSM133822	Walters_A-01-Kruger-WL1_REP1	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.7	99.3	GSM142799	SS001_ATH1_A2-Smith-22	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
11.7	99.3	GSM275639	Ler_2h	GSE10876	Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
11.7	99.3	GSM134362	St.Clair_1-23_363_Cvi-1_0.02%-silwet_Rep2_ATH1	GSE5753	Expression Level Polymorphism Project (ELP) - Cvi-1
11.4	99.3	GSM38669	NSPS	GSE2268	Arabidopsis polysome microarray
11.1	99.2	GSM142841	MG001_ATH1_A22-Torres-7N1	GSE6176	Impact of Type III effectors on plant defense responses
11.1	99.2	ArrayExpress	E-MEXP-550-raw-cel-871342481	-	-	-
11.1	99.2	ArrayExpress	E-MEXP-449-raw-cel-676423253	-	-	-
11.0	99.2	ArrayExpress	E-MEXP-550-raw-cel-871342454	-	-	-
11.0	99.2	GSM133733	Buchanan-Wollaston_A-5-bwoll-NG1_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
11.0	99.2	GSM142842	MG001_ATH1_A23-Torres-7N3	GSE6176	Impact of Type III effectors on plant defense responses
10.8	99.2	GSM128670	Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.8	99.2	GSM106828	opr3_0 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.6	99.2	ArrayExpress	E-MEXP-550-raw-cel-871342490	-	-	-
10.6	99.2	GSM133832	Walters_A-11-Kruger-MH2_REP2	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
10.6	99.2	GSM142843	MG001_ATH1_A24-Torres-7N6	GSE6176	Impact of Type III effectors on plant defense responses
10.6	99.2	GSM131539	ATGE_25_C	GSE5630	AtGenExpress: Developmental series (leaves)
10.5	99.2	GSM131537	ATGE_25_A	GSE5630	AtGenExpress: Developmental series (leaves)
10.5	99.2	GSM106970	opr3_OPDA_22 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.4	99.2	GSM106908	opr3_JA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.3	99.2	GSM133734	Buchanan-Wollaston_A-6-bwoll-NG2_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
10.2	99.2	ArrayExpress	E-MEXP-546-raw-cel-863289641	-	-	-
10.1	99.2	GSM260956	A3-LLOYD-PHO_REP3	GSE10326	Transcriptome analysis of pho3
10.1	99.2	ArrayExpress	E-TABM-52-raw-cel-1583683198	-	-	-
10.0	99.2	ArrayExpress	E-MEXP-550-raw-cel-871342499	-	-	-
10.0	99.2	GSM106911	opr2_JA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.9	99.1	GSM297395	At.StarchSD.WTSS3.WTR2D4	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
9.8	99.1	GSM133833	Walters_A-12-Kruger-MH3_REP3	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
9.6	99.1	GSM133731	Buchanan-Wollaston_A-3-bwoll-C0S_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
9.5	99.1	GSM142810	SS002_ATH1_A2-smith-01h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
9.3	99.1	GSM106914	opr3_JA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.3	99.1	GSM106967	opr3_OPDA_22 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.3	99.1	GSM260958	A6-LLOYD-CON_REP3	GSE10326	Transcriptome analysis of pho3
9.3	99.1	GSM106921	opr3_OPDA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2	99.1	GSM38668	NSNP	GSE2268	Arabidopsis polysome microarray
9.2	99.1	GSM128679	Underwood_1-32_Mock-Inoculum-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.1	99.1	ArrayExpress	E-MEXP-550-raw-cel-871342373	-	-	-
9.0	99.1	GSM133735	Buchanan-Wollaston_A-7-bwoll-Ei1_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
8.9	99.0	ArrayExpress	E-MEXP-285-raw-cel-440783335	-	-	-
8.9	99.0	ArrayExpress	E-MEXP-849-raw-cel-1181980838	-	-	-
8.9	99.0	ArrayExpress	E-TABM-52-raw-cel-1583683358	-	-	-
8.8	99.0	GSM106912	opr3_JA 8hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
8.7	99.0	GSM142805	SS001_ATH1_A8-Smith-11	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
8.7	99.0	GSM205160	protoplast_controlDNA_rep2	GSE8257	Identification of KIN10-target genes in Arabidopsis mesophyll cells
8.6	99.0	GSM134365	St.Clair_1-26_371_Cvi-1_0.02%-silwet_Rep2_ATH1	GSE5753	Expression Level Polymorphism Project (ELP) - Cvi-1
8.6	99.0	GSM106966	opr3_OPDA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

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Gene ID	At5g54250
Gene name	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)
Functional description	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.