| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 240.1 | 100.0 | GSM226270 | phyAphyB_Dark_replicate1 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks |  |
| 153.3 | 99.9 | GSM226271 | phyAphyB_Dark_replicate2 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 149.3 | 99.9 | GSM226267 | WT(Ler)_Dark_replicate1 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 149.1 | 99.9 | GSM226269 | WT(Ler)_Dark_replicate3 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 148.6 | 99.9 | GSM226272 | phyAphyB_Dark_replicate3 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 144.7 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618104 | - | - | - |
| 139.9 | 99.9 | GSM226268 | WT(Ler)_Dark_replicate2 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 136.5 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618033 | - | - | - |
| 135.0 | 99.9 | ArrayExpress | E-NASC-78-raw-cel-1463195219 | - | - | - |
| 132.9 | 99.9 | ArrayExpress | E-NASC-78-raw-cel-1463195267 | - | - | - |
| 130.5 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530617935 | - | - | - |
| 124.7 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530617971 | - | - | - |
| 116.2 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618068 | - | - | - |
| 111.3 | 99.9 | GSM133118 | RIKEN-YAMAUCHI1B | GSE5687 | AtGenExpress: Different temperature treatment of seeds | |
| 104.2 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618136 | - | - | - |
| 99.2 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618275 | - | - | - |
| 91.3 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618003 | - | - | - |
| 89.1 | 99.9 | ArrayExpress | E-NASC-78-raw-cel-1463195187 | - | - | - |
| 85.0 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530618171 | - | - | - |
| 78.5 | 99.9 | ArrayExpress | E-MEXP-1468-raw-cel-1591138754 | - | - | - |
| 71.1 | 99.9 | GSM282703 | arf2_brz_2 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 70.8 | 99.9 | GSM292077 | Wt, dark sample, biological rep2 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 68.6 | 99.9 | ArrayExpress | E-MEXP-1304-raw-cel-1530617900 | - | - | - |
| 64.6 | 99.8 | GSM134513 | Col-0_4day_dark_-lincomycin_rep1 | GSE5759 | red illumination w/o lincomycin | |
| 62.6 | 99.8 | ArrayExpress | E-MEXP-1304-raw-cel-1530618235 | - | - | - |
| 59.2 | 99.8 | GSM282697 | Col_BRZ_rep1 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 54.6 | 99.8 | ArrayExpress | E-MEXP-1784-raw-cel-1661572952 | - | - | - |
| 53.3 | 99.8 | ArrayExpress | E-MEXP-1784-raw-cel-1661572978 | - | - | - |
| 52.4 | 99.8 | ArrayExpress | E-MEXP-1468-raw-cel-1591138721 | - | - | - |
| 51.9 | 99.8 | ArrayExpress | E-MEXP-1784-raw-cel-1661572965 | - | - | - |
| 51.4 | 99.8 | GSM282699 | Col_BRZ_rep3 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 50.4 | 99.8 | ArrayExpress | E-MEXP-1468-raw-cel-1591138688 | - | - | - |
| 48.7 | 99.8 | ArrayExpress | E-MEXP-1304-raw-cel-1530618203 | - | - | - |
| 48.1 | 99.8 | ArrayExpress | E-NASC-78-raw-cel-1463195235 | - | - | - |
| 47.0 | 99.8 | ArrayExpress | E-MEXP-1468-raw-cel-1591138985 | - | - | - |
| 46.7 | 99.8 | GSM282694 | arf2_mock_rep1 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 46.0 | 99.8 | ArrayExpress | E-MEXP-1468-raw-cel-1591139018 | - | - | - |
| 45.6 | 99.8 | GSM134514 | Col-0_4day_dark_-lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 44.8 | 99.8 | GSM282698 | Col_BRZ_rep2 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 43.8 | 99.8 | ArrayExpress | E-MEXP-1468-raw-cel-1591138655 | - | - | - |
| 43.7 | 99.8 | GSM282696 | arf2_mock_rep3 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 42.6 | 99.8 | GSM134517 | Col-0_4day_red illumination_-lincomycin_rep1 | GSE5759 | red illumination w/o lincomycin | |
| 42.1 | 99.8 | ArrayExpress | E-MEXP-1784-raw-cel-1661573117 | - | - | - |
| 42.0 | 99.8 | GSM282700 | Col_mock_rep1 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 40.5 | 99.8 | GSM282695 | arf2_mock_rep2 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 39.7 | 99.8 | GSM292078 | Wt, dark sample, biological rep3 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 37.1 | 99.7 | GSM292076 | Wt, dark sample, biological rep1 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 35.9 | 99.7 | GSM134518 | Col-0_4day_red illumination_-lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 35.9 | 99.7 | GSM134515 | Col-0_4day_dark_+lincomycin_rep1 | GSE5759 | red illumination w/o lincomycin | |
| 35.3 | 99.7 | GSM282702 | Col_mock_rep3 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 35.2 | 99.7 | GSM282701 | Col_mock_rep2 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 30.9 | 99.7 | ArrayExpress | E-MEXP-1784-raw-cel-1661573160 | - | - | - |
| 30.6 | 99.7 | GSM282693 | arf2_brz_1 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 27.8 | 99.7 | ArrayExpress | E-MEXP-1784-raw-cel-1661573138 | - | - | - |
| 27.3 | 99.7 | GSM131189 | AtGen_D-22_2-AL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 21.5 | 99.6 | GSM319208 | Dark-grown WT control (vector#1) | GSE12729 | Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings | |
| 20.8 | 99.6 | ArrayExpress | E-MEXP-1784-raw-cel-1661573096 | - | - | - |
| 19.2 | 99.6 | ArrayExpress | E-NASC-78-raw-cel-1463195203 | - | - | - |
| 18.8 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661573173 | - | - | - |
| 18.6 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661572909 | - | - | - |
| 17.3 | 99.5 | GSM131190 | AtGen_D-23_2-UL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.0 | 99.5 | GSM134516 | Col-0_4day_dark_+lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 16.3 | 99.5 | ArrayExpress | E-NASC-78-raw-cel-1463195171 | - | - | - |
| 15.7 | 99.5 | GSM134520 | Col-0_4day_red illumination _+lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 15.1 | 99.4 | GSM319209 | Dark-grown WT control (vector#4) | GSE12729 | Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings | |
| 14.9 | 99.4 | ArrayExpress | E-MEXP-1784-raw-cel-1661573186 | - | - | - |
| 14.5 | 99.4 | ArrayExpress | E-NASC-78-raw-cel-1463195251 | - | - | - |
| 14.0 | 99.4 | GSM131216 | AtGen_D-26_1-FS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 13.8 | 99.4 | ArrayExpress | E-MEXP-1468-raw-cel-1591138853 | - | - | - |
| 13.3 | 99.4 | GSM142880 | GW001_ATH1_A25-Warre-24f | GSE6177 | The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses | |
| 12.6 | 99.3 | ArrayExpress | E-MEXP-1112-raw-cel-1590665481 | - | - | - |
| 12.6 | 99.3 | GSM292080 | pif1-2, dark sample, biological rep2 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 11.3 | 99.3 | GSM131169 | AtGen_D-1_1-DL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 10.9 | 99.2 | ArrayExpress | E-MEXP-1784-raw-cel-1661573005 | - | - | - |
| 10.5 | 99.2 | ArrayExpress | E-MEXP-1468-raw-cel-1591138886 | - | - | - |
| 10.2 | 99.2 | ArrayExpress | E-MEXP-148-raw-cel-350529179 | - | - | - |
| 10.0 | 99.2 | ArrayExpress | E-NASC-78-raw-cel-1463195283 | - | - | - |
| 9.9 | 99.1 | ArrayExpress | E-MEXP-148-raw-cel-350529268 | - | - | - |
| 9.8 | 99.1 | GSM159300 | CCA1-34_dark_early_rep1 | GSE6906 | Rhythmic growth explained by coincidence between internal and external cues | |
| 9.8 | 99.1 | ArrayExpress | E-MEXP-1112-raw-cel-1590665533 | - | - | - |
| 9.6 | 99.1 | ArrayExpress | E-MEXP-1784-raw-cel-1661572888 | - | - | - |
| 9.3 | 99.1 | GSM128714 | Thorlby_1-3_24h-post-freeze_REP3_ATH1 | GSE5524 | Gene Expression During Recovery from Freezing | |
| 9.2 | 99.1 | GSM292079 | pif1-2, dark sample, biological rep1 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 8.8 | 99.0 | GSM226276 | WT(Ler)_Rc15_replicate1 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
