CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g53950

Gene name CUC2 (CUP-SHAPED COTYLEDON 2)

Functional description Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
347.3 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
317.4 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
302.1 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
190.4 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
144.4 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.1 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.3 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.5 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.7 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.8 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.9 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
61.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.3 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
54.8 99.8 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
54.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.5 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.0 99.8 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
34.3 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.0 99.7 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
32.4 99.7 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
32.4 99.7 GSM142591 DB001_ATH1_A1-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
31.4 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.1 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.7 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.1 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.0 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
27.9 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.5 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.7 99.7 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
25.6 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.5 99.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
24.8 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.1 99.6 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
21.5 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
21.5 99.6 GSM242964 Steroid day 7 (day7D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
21.0 99.6 ArrayExpress E-MEXP-682-raw-cel-922397577 - - -
18.8 99.5 GSM242963 Steroid day 7 (day7D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
18.8 99.5 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
18.4 99.5 GSM131671 ATGE_48_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
18.1 99.5 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.7 99.5 ArrayExpress E-MEXP-682-raw-cel-922397696 - - -
16.5 99.5 ArrayExpress E-MEXP-682-raw-cel-922397662 - - -
16.4 99.5 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.4 99.5 GSM131672 ATGE_48_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
16.3 99.5 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.6 99.5 GSM131105 Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
14.1 99.4 GSM242961 Mock day 7 (day7E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.0 99.4 ArrayExpress E-MEXP-682-raw-cel-922397713 - - -
14.0 99.4 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
13.5 99.4 ArrayExpress E-MEXP-682-raw-cel-922397560 - - -
13.3 99.4 GSM131670 ATGE_48_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
12.7 99.3 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
12.2 99.3 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
11.9 99.3 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.7 99.3 GSM131662 ATGE_29_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
11.5 99.3 GSM131675 ATGE_49_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
11.5 99.3 GSM131665 ATGE_46_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
11.5 99.3 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.4 99.3 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
10.8 99.2 GSM131664 ATGE_46_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.7 99.2 GSM131663 ATGE_29_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
10.7 99.2 ArrayExpress E-ATMX-13-raw-cel-1556149839 - - -
10.6 99.2 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.0 99.2 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.0 99.2 GSM133765 Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8 99.1 GSM131673 ATGE_49_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.7 99.1 GSM131666 ATGE_46_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
9.4 99.1 ArrayExpress E-MEXP-728-raw-cel-1062073338 - - -
9.4 99.1 ArrayExpress E-MEXP-682-raw-cel-922397679 - - -
9.3 99.1 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.9 99.0 GSM242953 Mock day 1 (day1E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
8.7 99.0 ArrayExpress E-ATMX-13-raw-cel-1556149775 - - -

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
347.3	100.0	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
317.4	100.0	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
302.1	100.0	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
190.4	100.0	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
144.4	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.1	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
87.3	99.9	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
82.5	99.9	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.7	99.9	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
65.8	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
64.9	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
61.3	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
57.3	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
54.8	99.8	GSM142593	DB001_ATH1_A3-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
54.1	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.5	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.0	99.8	GSM142596	DB001_ATH1_A6-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
34.3	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.0	99.7	GSM142594	DB001_ATH1_A4-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
32.4	99.7	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
32.4	99.7	GSM142591	DB001_ATH1_A1-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
31.4	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.1	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.7	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.1	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.0	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
27.9	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.5	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.7	99.7	GSM142592	DB001_ATH1_A2-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
25.6	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.5	99.7	GSM242960	Steroid day 3 (day3D2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
24.8	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.1	99.6	GSM226538	L8SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
21.5	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
21.5	99.6	GSM242964	Steroid day 7 (day7D2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
21.0	99.6	ArrayExpress	E-MEXP-682-raw-cel-922397577	-	-	-
18.8	99.5	GSM242963	Steroid day 7 (day7D1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
18.8	99.5	GSM242956	Steroid day 1 (day1D2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
18.4	99.5	GSM131671	ATGE_48_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
18.1	99.5	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.7	99.5	ArrayExpress	E-MEXP-682-raw-cel-922397696	-	-	-
16.5	99.5	ArrayExpress	E-MEXP-682-raw-cel-922397662	-	-	-
16.4	99.5	GSM133774	Lindsey_1-26_torpedo-meristem_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.4	99.5	GSM131672	ATGE_48_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
16.3	99.5	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.6	99.5	GSM131105	Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
14.1	99.4	GSM242961	Mock day 7 (day7E1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
14.0	99.4	ArrayExpress	E-MEXP-682-raw-cel-922397713	-	-	-
14.0	99.4	GSM131661	ATGE_29_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
13.5	99.4	ArrayExpress	E-MEXP-682-raw-cel-922397560	-	-	-
13.3	99.4	GSM131670	ATGE_48_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
12.7	99.3	GSM242962	Mock day 7 (day7E2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
12.2	99.3	GSM131674	ATGE_49_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
11.9	99.3	GSM133960	Fukuda_1-5_4A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.7	99.3	GSM131662	ATGE_29_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
11.5	99.3	GSM131675	ATGE_49_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
11.5	99.3	GSM131665	ATGE_46_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
11.5	99.3	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.4	99.3	GSM242959	Steroid day 3 (day3D1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
10.8	99.2	GSM131664	ATGE_46_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
10.7	99.2	GSM131663	ATGE_29_C2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
10.7	99.2	ArrayExpress	E-ATMX-13-raw-cel-1556149839	-	-	-
10.6	99.2	GSM176878	AWP_AL_Txed_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.0	99.2	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.0	99.2	GSM133765	Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8	99.1	GSM131673	ATGE_49_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.7	99.1	GSM131666	ATGE_46_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.4	99.1	ArrayExpress	E-MEXP-728-raw-cel-1062073338	-	-	-
9.4	99.1	ArrayExpress	E-MEXP-682-raw-cel-922397679	-	-	-
9.3	99.1	GSM133961	Fukuda_1-6_4B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.9	99.0	GSM242953	Mock day 1 (day1E1)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
8.7	99.0	ArrayExpress	E-ATMX-13-raw-cel-1556149775	-	-	-

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At5g53950
Gene name	CUC2 (CUP-SHAPED COTYLEDON 2)
Functional description	Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.