Specifically-expressed experiments

Gene ID	At5g48720
Gene name	XRI1 (X-RAY INDUCED TRANSCRIPT 1)
Functional description	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
225.5	100.0	GSM131369	AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
224.7	100.0	GSM131375	AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
173.1	100.0	GSM131376	AtGen_6-5512_Genotoxicstress-Shoots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
161.7	99.9	GSM131370	AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
158.1	99.9	GSM131365	AtGen_6-5221_Genotoxicstress-Roots-1.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
154.0	99.9	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
136.6	99.9	GSM131378	AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
135.1	99.9	GSM131374	AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
131.6	99.9	GSM131381	AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
108.0	99.9	GSM131372	AtGen_6-5412_Genotoxicstress-Shoots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
107.4	99.9	GSM131373	AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
103.3	99.9	GSM133948	Murray_2-4_T6-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
101.1	99.9	GSM131366	AtGen_6-5222_Genotoxicstress-Roots-1.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
99.1	99.9	GSM131382	AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
98.6	99.9	GSM131377	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
91.1	99.9	GSM131371	AtGen_6-5411_Genotoxicstress-Shoots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
85.3	99.9	GSM133950	Murray_2-6_T10-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
84.1	99.9	GSM133949	Murray_2-5_T8-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
82.5	99.9	GSM133952	Murray_2-8_T14-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
77.3	99.9	GSM133951	Murray_2-7_T12-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
75.3	99.9	GSM142885	CW001_ATH1_A1.4-WestC-kub	GSE6178	Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
68.3	99.9	GSM131368	AtGen_6-5312_Genotoxicstress-Shoots-3.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
68.0	99.9	GSM133947	Murray_2-3_T4-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
61.4	99.8	GSM133953	Murray_2-9_T16-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
55.4	99.8	GSM131379	AtGen_6-5611_Genotoxicstress-Shoots-24.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
54.0	99.8	GSM142883	CW001_ATH1_A1.2-WestC-wsb	GSE6178	Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
48.4	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.1	99.8	GSM131367	AtGen_6-5311_Genotoxicstress-Shoots-3.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
42.8	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.8	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.6	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.2	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.0	99.7	GSM131380	AtGen_6-5612_Genotoxicstress-Shoots-24.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
32.9	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.8	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.3	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.3	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.1	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.2	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.1	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.9	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.8	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.2	99.6	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.0	99.6	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.5	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.2	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.6	99.5	GSM245910	csn3-1 mutant light replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
17.5	99.5	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
17.1	99.5	ArrayExpress	E-MEXP-1329-raw-cel-1556125368	-	-	-
16.0	99.5	ArrayExpress	E-MEXP-1329-raw-cel-1556125403	-	-	-
16.0	99.5	GSM284385	Arabidopsis GEP6	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.0	99.5	GSM131361	AtGen_6-5121_Genotoxicstress-Roots-0.5h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
15.6	99.5	ArrayExpress	E-MEXP-502-raw-cel-821459618	-	-	-
15.5	99.5	GSM245919	csn3-1 mutant dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
14.6	99.4	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.3	99.4	ArrayExpress	E-MEXP-502-raw-cel-821459356	-	-	-
13.6	99.4	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.6	99.4	ArrayExpress	E-MEXP-1329-raw-cel-1556125298	-	-	-
11.5	99.3	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.2	99.2	ArrayExpress	E-MEXP-502-raw-cel-821459940	-	-	-
10.2	99.2	GSM245913	csn5 (csn5a-2 csn5b) mutant light replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
9.8	99.1	GSM245912	csn3-1 mutant light replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
9.6	99.1	GSM205160	protoplast_controlDNA_rep2	GSE8257	Identification of KIN10-target genes in Arabidopsis mesophyll cells
9.2	99.1	GSM131362	AtGen_6-5122_Genotoxicstress-Roots-0.5h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
9.2	99.1	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.2	99.1	GSM133957	Fukuda_1-2_0B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.1	99.1	GSM88051	csn4-1_mutant replicate 3	GSE3865	CSN4-1 mutant analysis
8.9	99.0	GSM88049	csn4-1_mutant replicate 1	GSE3865	CSN4-1 mutant analysis

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