Specifically-expressed experiments

Gene ID At5g48070
Gene name XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)
Functional description putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
174.7100.0GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
140.199.9GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
118.499.9GSM133719Deeken_A-1-Deeke-Tum_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
114.799.9GSM133141S1500_8H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
84.099.9GSM131277AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
81.299.9GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
78.399.9GSM133129S0_8H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
78.299.9GSM133142S1500_8H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
73.699.9GSM133140S1500_4H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
73.199.9ArrayExpressE-MEXP-635-raw-cel-912819840---
70.999.9GSM131278AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
68.399.9GSM226552Slice10JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
61.199.8GSM226551Slice9JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
59.799.8ArrayExpressE-MEXP-635-raw-cel-912819824---
56.099.8GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
52.899.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.799.8GSM133721Deeken_A-1-Deeke-Tum_SLD_REP2GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
48.399.8GSM184557Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
48.199.8GSM133134S1500_12H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
46.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.199.8GSM218594Whole roots 3.5hr KNO3 treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
46.099.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
44.299.8GSM133130S0_8H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
42.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
42.799.8GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
42.199.8GSM133121S0_12H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
41.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM133128S0_4H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
37.099.7GSM133122S0_12H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
36.399.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.899.7GSM184559Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.599.7GSM133133S1500_12H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
31.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.299.7GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.999.7ArrayExpressE-MEXP-791-raw-cel-1122937605---
29.699.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.699.7GSM184529Stele root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.699.7ArrayExpressE-MEXP-791-raw-cel-1122937623---
26.499.7GSM218591Whole roots 3.5hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.799.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.399.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.399.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.099.6GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
22.999.6ArrayExpressE-MEXP-791-raw-cel-1122937587---
22.499.6GSM133135S1500_24H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
22.299.6GSM184930Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
21.399.6GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
20.799.6GSM133126S0_2H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
20.699.6GSM184928Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
19.899.6GSM184499Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.799.6GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
19.399.6GSM226550Slice8JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
19.299.6GSM142752MJ001_ATH1_A3-jones-rh1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
18.499.5ArrayExpressE-MEXP-637-raw-cel-913038938---
18.099.5GSM226554Slice12JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
17.899.5GSM142755MJ001_ATH1_A6-jones-RH-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
17.599.5GSM128796Zarka_1-8_MT-WT7DB_Rep2_ATH1GSE5534Response to cold, plate grown plantsLink to GEO
17.499.5GSM157310Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
17.199.5GSM179978Arabidopsis ein2 mutant roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
16.499.5GSM131354AtGen_6-4522_Droughtstress-Roots-12.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
16.399.5GSM133123S0_24H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
16.099.5GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.799.5GSM128795Zarka_1-7_MT-WT7DA_Rep1_ATH1GSE5534Response to cold, plate grown plantsLink to GEO
15.499.5ArrayExpressE-MEXP-637-raw-cel-913038965---
15.199.4GSM179976Arabidopsis ein2 mutant roots, mock treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
15.099.4GSM184926Arabidopsis, whole roots, standard conditions, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
15.099.4GSM128793Zarka_1-5_MT-WT24HA_Rep1_ATH1GSE5534Response to cold, plate grown plantsLink to GEO
14.899.4ArrayExpressE-MEXP-828-raw-cel-1156922455---
14.799.4GSM142721CH001_ATH1_A001-Hampt-wsaGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
14.699.4GSM184929Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
14.399.4GSM142753MJ001_ATH1_A4-jones-rh2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
14.299.4GSM184523Stele root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.999.4GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
13.999.4GSM184927Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis rootsLink to GEO
13.599.4GSM184543Whole roots 2hr KNO3 treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.499.4GSM184538Whole roots 2hr KCl control treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.499.4ArrayExpressE-MEXP-791-raw-cel-1122937578---
13.399.4GSM133139S1500_4H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
13.199.4GSM226540L10SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.099.4GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.099.4GSM184502Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.999.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.899.3GSM260880Yap_A1-AMFGSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathwaysLink to GEO
12.699.3ArrayExpressE-MEXP-791-raw-cel-1122937614---
12.599.3GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.599.3ArrayExpressE-MEXP-828-raw-cel-1156922467---
12.599.3GSM157307Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
12.499.3GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.499.3GSM184498Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.399.3GSM133124S0_24H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
12.299.3GSM131274AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
11.999.3GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
11.899.3ArrayExpressE-MEXP-637-raw-cel-913039171---
11.399.3GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.399.3GSM133138S1500_2H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
11.299.2GSM157309Gan_1-5_wildtype-nitrate-continuous(WNC)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
11.299.2ArrayExpressE-MEXP-828-raw-cel-1156922509---
11.299.2GSM184553Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.199.2GSM179975Arabidopsis ein2 mutant roots, mock treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
11.099.2GSM142726CH001_ATH1_A005-Hampt-wsb_repeatGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
10.799.2GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
10.699.2ArrayExpressE-MEXP-828-raw-cel-1156922416---
10.699.2ArrayExpressE-MEXP-791-raw-cel-1122937596---
10.599.2GSM226553Slice11JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.499.2GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.399.2GSM184544Whole roots 2hr KNO3 treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.399.2GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.299.2GSM179977Arabidopsis ein2 mutant roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
10.199.2GSM218592Whole roots 3.5hr KCl control treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.899.1GSM133136S1500_24H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
9.799.1ArrayExpressE-MEXP-828-raw-cel-1156922891---
9.799.1GSM131273AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
9.799.1ArrayExpressE-ATMX-5-raw-cel-1303134335---
9.499.1GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
9.299.1GSM142727CH001_ATH1_A006-Hampt-akbGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
9.099.1GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
9.099.1GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.099.1GSM157328Hammond_3-12_Caesium-treated-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
8.999.0GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
8.699.0GSM131313AtGen_6-3221_Saltstress-Roots-1.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
8.699.0GSM142729CH001_ATH1_A008-Hampt-c1bGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO



Back to the CoP portal site

Back to the KAGIANA project homepage