CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g47220

Gene name ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)

Functional description Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
348.2 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273223 - - -
347.5 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273196 - - -
273.8 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273088 - - -
263.8 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273060 - - -
261.0 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273116 - - -
238.2 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273170 - - -
187.5 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273252 - - -
135.3 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273144 - - -
102.4 99.9 ArrayExpress E-MEXP-807-raw-cel-1173272948 - - -
97.5 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
70.7 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
70.0 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
66.8 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
56.7 99.8 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
49.7 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
39.4 99.8 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
30.0 99.7 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.7 99.7 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
27.7 99.7 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.2 99.7 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.9 99.6 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.9 99.5 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
17.0 99.5 ArrayExpress E-MEXP-807-raw-cel-1173273032 - - -
16.4 99.5 GSM184521 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.2 99.4 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.1 99.4 ArrayExpress E-MEXP-807-raw-cel-1173272921 - - -
14.0 99.4 ArrayExpress E-MEXP-807-raw-cel-1173273005 - - -
13.7 99.4 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
12.3 99.3 ArrayExpress E-TABM-209-raw-cel-1316546471 - - -
12.2 99.3 GSM184510 Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.1 99.3 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.1 99.3 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.7 99.3 ArrayExpress E-TABM-209-raw-cel-1316546535 - - -
11.6 99.3 ArrayExpress E-MEXP-807-raw-cel-1173272977 - - -
11.1 99.2 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.6 99.2 GSM269816 T8 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.6 99.2 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.5 99.2 ArrayExpress E-MEXP-449-raw-cel-676423253 - - -
10.3 99.2 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
10.0 99.2 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.7 99.1 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
9.6 99.1 GSM269818 C2 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.6 99.1 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.6 99.1 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.2 99.1 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
9.1 99.1 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.0 99.1 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
9.0 99.1 ArrayExpress E-MEXP-807-raw-cel-1173272894 - - -
8.9 99.0 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 GSM184518 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 ArrayExpress E-TABM-209-raw-cel-1316546455 - - -
8.7 99.0 ArrayExpress E-ATMX-30-raw-cel-1513696930 - - -
8.6 99.0 GSM131395 AtGen_6-7311_UV-Bstress-Shoots-3.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
8.6 99.0 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
348.2	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
347.5	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
273.8	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
263.8	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
261.0	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
238.2	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
187.5	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
135.3	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-
102.4	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173272948	-	-	-
97.5	99.9	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
70.7	99.9	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
70.0	99.9	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
66.8	99.8	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
56.7	99.8	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
49.7	99.8	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
39.4	99.8	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
30.0	99.7	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
29.7	99.7	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
27.7	99.7	GSM184519	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
27.2	99.7	GSM184516	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
20.9	99.6	GSM184493	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.9	99.5	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
17.0	99.5	ArrayExpress	E-MEXP-807-raw-cel-1173273032	-	-	-
16.4	99.5	GSM184521	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.2	99.4	GSM218585	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.1	99.4	ArrayExpress	E-MEXP-807-raw-cel-1173272921	-	-	-
14.0	99.4	ArrayExpress	E-MEXP-807-raw-cel-1173273005	-	-	-
13.7	99.4	GSM133968	Birnbaum_1-19_LRC-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
12.3	99.3	ArrayExpress	E-TABM-209-raw-cel-1316546471	-	-	-
12.2	99.3	GSM184510	Pericycle root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.1	99.3	GSM184503	Pericycle root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.1	99.3	GSM184517	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.7	99.3	ArrayExpress	E-TABM-209-raw-cel-1316546535	-	-	-
11.6	99.3	ArrayExpress	E-MEXP-807-raw-cel-1173272977	-	-	-
11.1	99.2	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.8	99.2	GSM218586	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.6	99.2	GSM269816	T8 leaf-well watered-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.6	99.2	GSM184509	Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.5	99.2	ArrayExpress	E-MEXP-449-raw-cel-676423253	-	-	-
10.3	99.2	GSM204069	protoplast_hypoxia_rep1	GSE8248	Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
10.0	99.2	GSM184507	Pericycle root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.7	99.1	GSM133030	BC482-2	GSE5684	AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
9.6	99.1	GSM269818	C2 leaf-well watered-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.6	99.1	GSM133969	Birnbaum_1-20_LRC-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.6	99.1	GSM184500	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.2	99.1	GSM39196	RRE1_Chitin2	GSE2169	rre1 and rre2 mutants
9.1	99.1	GSM184492	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.0	99.1	GSM39214	RRE2_Chitin4	GSE2169	rre1 and rre2 mutants
9.0	99.1	ArrayExpress	E-MEXP-807-raw-cel-1173272894	-	-	-
8.9	99.0	GSM184508	Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	GSM184518	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	ArrayExpress	E-TABM-209-raw-cel-1316546455	-	-	-
8.7	99.0	ArrayExpress	E-ATMX-30-raw-cel-1513696930	-	-	-
8.6	99.0	GSM131395	AtGen_6-7311_UV-Bstress-Shoots-3.0h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
8.6	99.0	GSM218587	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root

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Gene ID	At5g47220
Gene name	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)
Functional description	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.