Specifically-expressed experiments

Gene ID At5g44260
Gene name zinc finger (CCCH-type) family protein
Functional description F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.599.8GSM282697Col_BRZ_rep1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
56.999.8ArrayExpressE-MEXP-1468-raw-cel-1591138952---
55.599.8GSM282699Col_BRZ_rep3GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
52.699.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
52.399.8ArrayExpressE-MEXP-1468-raw-cel-1591139018---
52.299.8GSM282703arf2_brz_2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
45.199.8ArrayExpressE-MEXP-838-raw-cel-1160703990---
44.399.8ArrayExpressE-MEXP-838-raw-cel-1160704054---
44.399.8GSM282693arf2_brz_1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
41.899.8ArrayExpressE-MEXP-838-raw-cel-1160703895---
40.299.8ArrayExpressE-MEXP-1468-raw-cel-1591138985---
39.299.8GSM282698Col_BRZ_rep2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
37.799.7ArrayExpressE-MEXP-1725-raw-cel-1669614592---
37.499.7ArrayExpressE-MEXP-1468-raw-cel-1591138853---
36.699.7GSM319209Dark-grown WT control (vector#4) GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
35.799.7ArrayExpressE-MEXP-1299-raw-cel-1519903848---
35.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.799.7GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
30.399.7ArrayExpressE-MEXP-1299-raw-cel-1519902780---
29.899.7ArrayExpressE-MEXP-1299-raw-cel-1519902871---
25.899.7ArrayExpressE-MEXP-1468-raw-cel-1591138886---
25.399.6ArrayExpressE-NASC-78-raw-cel-1463195187---
25.199.6GSM74896Wildtype_3H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
24.799.6ArrayExpressE-ATMX-3-raw-cel-1161357790---
24.799.6ArrayExpressE-NASC-78-raw-cel-1463195235---
23.699.6ArrayExpressE-NASC-78-raw-cel-1463195219---
23.499.6GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
22.599.6GSM9634arf2-6_+IAA_3GSE630Auxin-mediated gene expressionLink to GEO
22.499.6GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
22.399.6GSM25316324h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
22.299.6ArrayExpressCapper_1-11_E10_estradiol---
22.099.6ArrayExpressE-ATMX-3-raw-cel-1161357528---
21.999.6GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
21.599.6GSM282702Col_mock_rep3GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
21.199.6GSM282700Col_mock_rep1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
20.999.6GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
20.799.6ArrayExpressE-MEXP-1468-raw-cel-1591138655---
20.599.6ArrayExpressE-ATMX-3-raw-cel-1161357611---
20.199.6GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
20.099.6GSM133402Knight_2-4_sfr6-dk_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
19.999.6GSM282696arf2_mock_rep3GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
19.499.6ArrayExpressCapper_1-9_E6_estradiol---
19.199.6GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
18.699.5ArrayExpressE-MEXP-1468-raw-cel-1591138787---
18.499.5GSM157377Truman_1-5_Pst-DC3000(hrpA)-4hpi_Rep2_ATH1GSE6831Systemic response to avirulent bacterial infectionLink to GEO
18.399.5ArrayExpressE-MEXP-715-raw-cel-1121836247---
18.199.5GSM282701Col_mock_rep2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
18.199.5GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
17.599.5GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
17.499.5GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
17.499.5ArrayExpressE-MEXP-1299-raw-cel-1519903746---
17.399.5GSM9632arf2-6_+IAA_2GSE630Auxin-mediated gene expressionLink to GEO
17.299.5ArrayExpressE-ATMX-31-raw-cel-1516947933---
16.899.5GSM282695arf2_mock_rep2GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
16.399.5GSM9630arf2-6_+IAA_1GSE630Auxin-mediated gene expressionLink to GEO
16.299.5GSM157376Truman_1-4_Pst-DC3000-4hpi_Rep2_ATH1GSE6831Systemic response to avirulent bacterial infectionLink to GEO
15.999.5GSM157378Truman_1-6_Pst-DC3000(avrRpm1)-4hpi_Rep2_ATH1GSE6831Systemic response to avirulent bacterial infectionLink to GEO
15.999.5ArrayExpressE-ATMX-3-raw-cel-1161357740---
15.499.5ArrayExpressCapper_1-7_D9_estradiol---
15.499.5ArrayExpressE-MEXP-1304-raw-cel-1530618171---
15.399.4ArrayExpressE-ATMX-3-raw-cel-1161357954---
15.199.4ArrayExpressE-ATMX-31-raw-cel-1516947950---
15.099.4GSM74897Wildtype_3H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
14.999.4ArrayExpressE-ATMX-3-raw-cel-1161357362---
14.999.4ArrayExpressE-MEXP-838-raw-cel-1160703964---
14.899.4GSM292076Wt, dark sample, biological rep1GSE11594Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlingsLink to GEO
14.899.4ArrayExpressE-MEXP-1725-raw-cel-1669614572---
14.499.4ArrayExpressE-ATMX-31-raw-cel-1516947967---
14.399.4GSM282694arf2_mock_rep1GSE11216Brassinazole treatment of arf2 and wild-type dark-grown seedlingsLink to GEO
14.199.4ArrayExpressE-MEXP-1725-raw-cel-1669614613---
13.799.4ArrayExpressRente_1-1_WS2-HO_Rep1_ATH1---
13.799.4ArrayExpressRente_1-4_KKO-Control_Rep1_ATH1---
13.799.4ArrayExpressCapper_1-4_B8_water---
13.299.4ArrayExpressE-MEXP-1299-raw-cel-1519903415---
13.199.4GSM133860Beynon_1-3-cat-SpikeMix3_Rep1_ATH1GSE5739Comparison of CATMA, Affymetrix and Agilent arraysLink to GEO
13.099.4ArrayExpressE-MEXP-1725-raw-cel-1669614603---
12.899.3ArrayExpressE-MEXP-1468-raw-cel-1591138820---
12.799.3GSM133297NO.13GSE5699AtGenExpress: ARR21C overexpressionLink to GEO
12.799.3ArrayExpressCapper_1-1_A3_estradiol---
12.699.3GSM128658Underwood_1-11_Mock-Inoculum-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
12.699.3ArrayExpressCapper_1-10_E6_water---
12.599.3ArrayExpressE-MEXP-513-raw-cel-829814430---
12.499.3GSM2531618h into an extended nightAGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
12.399.3ArrayExpressE-MEXP-1304-raw-cel-1530618235---
12.299.3GSM25316424h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
12.199.3GSM133286NO.11GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
12.199.3GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
12.099.3GSM9628Col_+IAA_A2_3GSE630Auxin-mediated gene expressionLink to GEO
12.099.3GSM245916wild type dark replicate 1GSE9728COP9 signalosome (csn) mutant analysisLink to GEO
12.099.3GSM128727Pieterse_1-13_Mpersicae-48h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
11.999.3GSM74899Wildtype_6H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
11.999.3GSM134516Col-0_4day_dark_+lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
11.799.3ArrayExpressE-NASC-78-raw-cel-1463195267---
11.699.3GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.599.3GSM128657Underwood_1-10_Mock-Inoculum-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
11.599.3ArrayExpressE-MEXP-715-raw-cel-1121836113---
11.599.3ArrayExpressE-MEXP-475-raw-cel-680982323---
11.599.3GSM226272phyAphyB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
11.599.3GSM133400Knight_2-3_sfr6-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
11.399.3ArrayExpressE-MEXP-475-raw-cel-680982332---
11.299.2ArrayExpressE-MEXP-715-raw-cel-1121836221---
11.199.2GSM319210Dark-grown WT control (vector#7) GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
11.199.2ArrayExpressCapper_1-3_B8_estradiol---
11.099.2ArrayExpressE-MEXP-1299-raw-cel-1519902698---
11.099.2GSM268247WT-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
10.999.2ArrayExpressE-MEXP-1399-raw-cel-1574588503---
10.999.2GSM134514Col-0_4day_dark_-lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
10.899.2GSM67112Arabidopsis_Seedling04GSE3056Arabidopsis Pollination StudyLink to GEO
10.899.2GSM133253RIKEN-GODA11A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlingsLink to GEO
10.799.2ArrayExpressE-MEXP-838-raw-cel-1160704020---
10.699.2GSM131489ATGE_100_AGSE5629AtGenExpress: Developmental series (seedlings and whole plants)Link to GEO
10.599.2ArrayExpressE-ATMX-3-raw-cel-1161357446---
10.599.2ArrayExpressE-MEXP-715-raw-cel-1121835979---
10.299.2GSM133298NO.14GSE5699AtGenExpress: ARR21C overexpressionLink to GEO
10.299.2ArrayExpressE-MEXP-1304-raw-cel-1530618136---
10.199.2GSM226267WT(Ler)_Dark_replicate1GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
10.099.2GSM226268WT(Ler)_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
10.099.2ArrayExpressE-MEXP-1468-raw-cel-1591138721---
10.099.2ArrayExpressE-NASC-78-raw-cel-1463195171---
10.099.2ArrayExpressE-MEXP-444-raw-cel-670291861---
9.899.1ArrayExpressE-MEXP-1299-raw-cel-1519902994---
9.799.1ArrayExpressE-MEXP-1304-raw-cel-1530618275---
9.799.1GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
9.799.1ArrayExpressE-MEXP-838-raw-cel-1160703933---
9.699.1GSM133285NO.10GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
9.599.1ArrayExpressE-ATMX-3-raw-cel-1161357912---
9.599.1GSM157343Durrant_1-3_wild-type_Rep3_ATH1GSE6827Comparison of transcriptional profiles between sni1 and wild typeLink to GEO
9.399.1ArrayExpressE-MEXP-1399-raw-cel-1574588631---
9.299.1ArrayExpressE-MEXP-1399-raw-cel-1574589013---
9.299.1GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.299.1ArrayExpressE-NASC-78-raw-cel-1463195203---
9.299.1ArrayExpressE-MEXP-715-raw-cel-1121836334---
9.299.1GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.199.1GSM128809Mukhtar_1-1_XVE-SALK_Rep1_ATH1GSE5537Targets of AtWRKY27 in Arabidopsis leavesLink to GEO
9.199.1GSM158703WT-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
8.999.0ArrayExpressE-MEXP-1468-raw-cel-1591138919---
8.899.0GSM292080pif1-2, dark sample, biological rep2GSE11594Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlingsLink to GEO
8.899.0GSM156793albino rep2GSE6788Expression data of an albino mutant DS 13-2198-1Link to GEO
8.799.0GSM74900Wildtype_24H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
8.799.0GSM128659Underwood_1-12_Mock-Inoculum-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
8.699.0GSM133287NO.12GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
8.699.0GSM133259RIKEN-GODA1A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlingsLink to GEO



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