Specifically-expressed experiments

Gene ID At5g39610
Gene name ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)
Functional description Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.699.9GSM269827C2 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
62.299.8GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
51.899.8GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
49.299.8GSM184527Stele root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
48.399.8ArrayExpressE-MEXP-174-raw-cel-357966668---
46.699.8GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
46.499.8GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
44.199.8GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
40.299.8GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
39.599.8GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
38.299.8GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)Link to GEO
37.999.8ArrayExpressE-MEXP-174-raw-cel-357966634---
37.799.7GSM142845MG001_ATH1_A26-Torres-8N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
37.799.7GSM184524Stele root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.299.7ArrayExpressE-MEXP-1443-raw-cel-1581869921---
35.599.7GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
34.799.7GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
34.399.7ArrayExpressE-MEXP-1454-raw-cel-1585858071---
34.299.7GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
32.899.7ArrayExpressE-ATMX-30-raw-cel-1513696906---
31.899.7GSM133025BC181-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
31.799.7GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
31.099.7GSM269819C2 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
30.299.7GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
29.699.7GSM152141siz1-3 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
29.599.7GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
29.099.7GSM269829WT leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
27.999.7GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
26.699.7GSM131305AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
26.399.7ArrayExpressE-MEXP-807-raw-cel-1173273032---
26.099.7GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
25.599.7GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
25.199.6GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
24.999.6GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
24.399.6GSM269823T6 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
24.299.6ArrayExpressE-MEXP-174-raw-cel-357966600---
24.299.6ArrayExpressE-MEXP-807-raw-cel-1173272921---
24.199.6GSM131326AtGen_6-3522_Saltstress-Roots-12.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
23.699.6GSM133734Buchanan-Wollaston_A-6-bwoll-NG2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
23.299.6GSM184529Stele root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.499.6GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
21.199.6GSM268247WT-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
21.199.6GSM133732Buchanan-Wollaston_A-4-bwoll-C5S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
20.699.6ArrayExpressE-MEXP-1094-raw-cel-1379507193---
19.999.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
19.899.6ArrayExpressE-MEXP-711-raw-cel-1563002902---
19.399.6GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
19.299.6ArrayExpressE-MEXP-1454-raw-cel-1585857925---
19.299.6ArrayExpressE-MEXP-475-raw-cel-680982449---
18.399.5GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
18.299.5GSM133294NO.31GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
18.299.5ArrayExpressE-MEXP-475-raw-cel-680982521---
18.299.5GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
18.199.5ArrayExpressE-MEXP-1454-raw-cel-1585858107---
17.999.5ArrayExpressE-MEXP-173-raw-cel-357965520---
17.899.5GSM133733Buchanan-Wollaston_A-5-bwoll-NG1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
17.799.5GSM142826PJ002_ATH1_A7-jarvis-B1798GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
17.499.5GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
16.999.5GSM131297AtGen_6-2421_Osmoticstress-Roots-6.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
16.899.5GSM133737Buchanan-Wollaston_A-9-bwoll-Co1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
16.899.5ArrayExpressE-ATMX-30-raw-cel-1513696675---
16.699.5GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
16.599.5GSM133738Buchanan-Wollaston_A-10-bwoll-Co2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
16.499.5GSM133295NO.32GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
15.999.5ArrayExpressE-MEXP-475-raw-cel-680982485---
15.899.5GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
15.799.5GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
15.699.5GSM133296NO.33GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
15.599.5GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.599.5ArrayExpressE-TABM-52-raw-cel-1583683182---
15.299.4ArrayExpressE-MEXP-1094-raw-cel-1379507313---
15.199.4GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
14.999.4ArrayExpressE-MEXP-1454-raw-cel-1585857961---
14.999.4GSM158702HY213-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
14.499.4GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
14.499.4GSM131298AtGen_6-2422_Osmoticstress-Roots-6.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
14.399.4GSM142827PJ002_ATH1_A8-jarvis-B1798GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
14.399.4GSM131302AtGen_6-2522_Osmoticstress-Roots-12.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
14.199.4GSM142832GM001_ATH1_A9-Torres-3N6_repeat2GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
14.199.4ArrayExpressE-MEXP-1094-raw-cel-1379507233---
14.199.4GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
14.099.4GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
13.999.4ArrayExpressE-MEXP-1094-raw-cel-1379507273---
13.999.4GSM7717704h low CO2 + dark replicate AGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
13.699.4GSM131293AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
12.899.3ArrayExpressCapper_1-10_E6_water---
12.799.3GSM142855MG001_ATH1_A8-Torres-3N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
12.499.3GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
12.499.3GSM142823PJ002_ATH1_A4-jarvis-iae2GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
12.399.3ArrayExpressE-TABM-126-raw-cel-1242543417---
12.399.3ArrayExpressE-MEXP-1454-raw-cel-1585858509---
12.399.3ArrayExpressE-MEXP-807-raw-cel-1173272832---
12.299.3GSM7718004h low CO2 + dark replicate BGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
12.299.3ArrayExpressE-MEXP-1094-raw-cel-1379507473---
12.199.3GSM128720Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
11.699.3GSM131306AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
11.699.3GSM269497mkk1/mkk2, 24h after BTH, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutantLink to GEO
11.499.3ArrayExpressE-MEXP-1454-raw-cel-1585858254---
11.199.2ArrayExpressE-MEXP-1474-raw-cel-1593932801---
10.999.2GSM142828PJ002_ATH1_A9-jarvis-B1798GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
10.999.2GSM152137Col-0 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
10.799.2ArrayExpressE-ATMX-30-raw-cel-1513696830---
10.699.2ArrayExpressE-ATMX-32-raw-cel-1562974409---
10.599.2GSM142830GM001_ATH1_A14-Torres-4N3_repeat2GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
10.599.2ArrayExpressE-ATMX-30-raw-cel-1513696808---
10.499.2GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
10.399.2ArrayExpressE-MEXP-1299-raw-cel-1519902871---
10.399.2ArrayExpressE-MEXP-1094-raw-cel-1379507513---
10.299.2GSM142786HO001_ATH1_A3-Okamo-WS-ABAGSE6171Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABALink to GEO
10.299.2ArrayExpressE-MEXP-807-raw-cel-1173273005---
10.299.2GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
10.199.2ArrayExpressE-ATMX-31-raw-cel-1516947950---
10.199.2GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
10.199.2GSM184522Stele root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.099.2ArrayExpressE-MEXP-1474-raw-cel-1593932865---
9.999.1ArrayExpressCapper_1-9_E6_estradiol---
9.999.1GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.899.1GSM179969Arabidopsis aux1 mutant roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
9.899.1ArrayExpressE-TABM-209-raw-cel-1316546471---
9.899.1GSM128776Eulgem_1-3_Col-0-MKK2-w.t.4_Rep1_AGGSE5532Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2Link to GEO
9.699.1GSM142834MG001_ATH1_A12-Torres-5N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.699.1ArrayExpressE-MEXP-1443-raw-cel-1581869863---
9.599.1GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.399.1ArrayExpressE-MEXP-1094-raw-cel-1379507433---
9.399.1GSM179961Arabidopsis roots, ethylene treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
9.299.1GSM133724McCormac_1-2_wildtype-Contrl_Rep1_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
9.299.1GSM142822PJ002_ATH1_A3-jarvis-iae1GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
9.199.1GSM131301AtGen_6-2521_Osmoticstress-Roots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
9.199.1GSM142825PJ002_ATH1_A6-jarvis-iae2GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
9.199.1ArrayExpressE-MEXP-1454-raw-cel-1585858473---
9.199.1GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
9.099.1GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.099.1ArrayExpressCapper_1-11_E10_estradiol---
9.099.1GSM158703WT-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible systemLink to GEO
8.999.0GSM142848MG001_ATH1_A29-Torres-9N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
8.999.0GSM268249dor-drought-2, biological rep 2GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
8.999.0GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
8.899.0ArrayExpressE-MEXP-807-raw-cel-1173272977---
8.899.0ArrayExpressE-MEXP-1094-raw-cel-1379507553---
8.799.0GSM142821PJ002_ATH1_A2-jarvis-iae1GSE6175Clarification of the genetic basis of the iae1 and iae2 phenotypesLink to GEO
8.799.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO



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