Specifically-expressed experiments

Gene ID	At5g25890
Gene name	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)
Functional description	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
84.6	99.9	GSM142629	MC002_ATH1_A3.1-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
84.1	99.9	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
81.5	99.9	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
79.3	99.9	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
76.0	99.9	GSM142623	MC002_ATH1_A1.1-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
74.8	99.9	GSM142642	MC002_ATH1_A7.2-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
72.0	99.9	GSM142641	MC002_ATH1_A7.1-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
67.4	99.8	ArrayExpress	E-MEXP-828-raw-cel-1156922296	-	-	-
66.8	99.8	GSM142643	MC002_ATH1_A7.3-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
61.0	99.8	GSM142630	MC002_ATH1_A3.2-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
49.4	99.8	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
42.9	99.8	GSM142645	MC002_ATH1_A8.2-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
38.7	99.8	GSM142644	MC002_ATH1_A8.1-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
37.5	99.7	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
36.6	99.7	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
36.1	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922553	-	-	-
35.1	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922634	-	-	-
34.9	99.7	GSM142646	MC002_ATH1_A8.3-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.7	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922905	-	-	-
33.5	99.7	GSM226549	Slice7JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
32.0	99.7	GSM142648	MC002_ATH1_A9.2-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.6	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922572	-	-	-
31.3	99.7	GSM142649	MC002_ATH1_A9.3-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.2	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922368	-	-	-
29.3	99.7	GSM142647	MC002_ATH1_A9.1-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.8	99.7	ArrayExpress	E-ATMX-31-raw-cel-1516948018	-	-	-
28.5	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922987	-	-	-
28.3	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922485	-	-	-
26.8	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922968	-	-	-
26.7	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922891	-	-	-
26.7	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922613	-	-	-
26.1	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922809	-	-	-
26.0	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922438	-	-	-
25.8	99.7	ArrayExpress	E-MEXP-828-raw-cel-1156922659	-	-	-
25.0	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
24.8	99.6	GSM142654	MC002_ATH1_A11.2-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.2	99.6	GSM226538	L8SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
23.9	99.6	GSM142750	MJ001_ATH1_A1-jones-WT1	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
22.9	99.6	GSM142655	MC002_ATH1_A11.3-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.8	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922455	-	-	-
22.2	99.6	GSM142751	MJ001_ATH1_A2-jones-WT2	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
21.8	99.6	GSM142653	MC002_ATH1_A11.1-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.6	99.6	ArrayExpress	E-ATMX-31-raw-cel-1516947984	-	-	-
20.4	99.6	GSM226537	L7SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.3	99.6	ArrayExpress	E-ATMX-31-raw-cel-1516948001	-	-	-
20.3	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922318	-	-	-
20.3	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922684	-	-	-
20.0	99.6	GSM142754	MJ001_ATH1_A5-jones-WT-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
19.7	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922872	-	-	-
19.7	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922595	-	-	-
19.4	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922772	-	-	-
19.1	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922846	-	-	-
17.3	99.5	ArrayExpress	E-MEXP-828-raw-cel-1156922944	-	-	-
17.3	99.5	GSM226548	Slice6JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.3	99.5	ArrayExpress	E-MEXP-828-raw-cel-1156922509	-	-	-
17.2	99.5	GSM142651	MC002_ATH1_A10.2-dubos-wth	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.1	99.5	ArrayExpress	E-MEXP-828-raw-cel-1156922708	-	-	-
17.1	99.5	ArrayExpress	E-MEXP-828-raw-cel-1156922923	-	-	-
16.6	99.5	ArrayExpress	E-MEXP-828-raw-cel-1156922386	-	-	-
16.5	99.5	GSM142652	MC002_ATH1_A10.3-dubos-wth	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.4	99.5	ArrayExpress	E-MEXP-828-raw-cel-1156922416	-	-	-
16.3	99.5	GSM142661	MB002_ATH1_A1-Eland-ch1	GSE6153	Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
16.1	99.5	GSM133125	S0_2H_A	GSE5688	AtGenExpress: Response to sulfate limitation
16.1	99.5	GSM226550	Slice8JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
15.7	99.5	ArrayExpress	E-MEXP-791-raw-cel-1122937614	-	-	-
15.0	99.4	ArrayExpress	E-MEXP-828-raw-cel-1156922533	-	-	-
14.9	99.4	GSM133121	S0_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
14.9	99.4	GSM142650	MC002_ATH1_A10.1-dubos-wth	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.7	99.4	ArrayExpress	E-MEXP-828-raw-cel-1156922829	-	-	-
14.4	99.4	GSM157307	Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
14.4	99.4	ArrayExpress	E-MEXP-828-raw-cel-1156922342	-	-	-
14.3	99.4	GSM133126	S0_2H_B	GSE5688	AtGenExpress: Response to sulfate limitation
14.1	99.4	GSM184844	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
14.0	99.4	GSM133133	S1500_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
14.0	99.4	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.9	99.4	GSM226552	Slice10JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
13.6	99.4	GSM133138	S1500_2H_B	GSE5688	AtGenExpress: Response to sulfate limitation
13.4	99.4	ArrayExpress	E-MEXP-828-raw-cel-1156922794	-	-	-
13.0	99.4	GSM142662	MB002_ATH1_A2-Eland-ch2	GSE6153	Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
12.9	99.3	GSM133141	S1500_8H_A	GSE5688	AtGenExpress: Response to sulfate limitation
12.9	99.3	GSM142755	MJ001_ATH1_A6-jones-RH-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
12.4	99.3	ArrayExpress	E-MEXP-828-raw-cel-1156922731	-	-	-
12.4	99.3	GSM131434	AtGen_6-8525_Woundingstress-Roots-12.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
12.2	99.3	GSM131573	ATGE_99_A	GSE5631	AtGenExpress: Developmental series (roots)
12.1	99.3	GSM142658	MC002_ATH1_A12.3-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.7	99.3	ArrayExpress	E-MEXP-828-raw-cel-1156922750	-	-	-
11.6	99.3	GSM142733	CH001_ATH1_A012-Hampt-c1c	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
11.6	99.3	GSM133139	S1500_4H_A	GSE5688	AtGenExpress: Response to sulfate limitation
11.6	99.3	GSM142753	MJ001_ATH1_A4-jones-rh2	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
11.5	99.3	GSM133985	Birnbaum_1-15_StageIII-4_Rep4_ATH1	GSE5749	A gene expression map of the Arabidopsis root
11.5	99.3	GSM133132	S1500_0H_B	GSE5688	AtGenExpress: Response to sulfate limitation
11.4	99.3	GSM260883	Yap_A2-AMF_Rep2	GSE10323	Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
11.2	99.2	GSM133893	Schroeder_1-9_JS46-starve-48h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
11.2	99.2	GSM133891	Schroeder_1-3_JS45-control-48h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
11.1	99.2	GSM142656	MC002_ATH1_A12.1-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.0	99.2	GSM133122	S0_12H_B	GSE5688	AtGenExpress: Response to sulfate limitation
10.9	99.2	GSM226540	L10SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.9	99.2	GSM131394	AtGen_6-7222_UV-Bstress-Roots-1.0h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
10.9	99.2	GSM184843	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
10.8	99.2	GSM142727	CH001_ATH1_A006-Hampt-akb	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.6	99.2	GSM133137	S1500_2H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.5	99.2	GSM226541	L11SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.4	99.2	GSM133123	S0_24H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.4	99.2	GSM133892	Schroeder_1-6_JS43-control-96h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
10.3	99.2	GSM142657	MC002_ATH1_A12.2-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2	99.2	GSM131574	ATGE_99_B	GSE5631	AtGenExpress: Developmental series (roots)
10.2	99.2	ArrayExpress	E-MEXP-265-raw-cel-414617783	-	-	-
10.1	99.2	GSM133129	S0_8H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.1	99.2	GSM142669	SF002_ATH1_A7-Fille-ANGR4-12nodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
10.0	99.2	GSM131405	AtGen_6-7521_UV-Bstress-Roots-12.0h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
9.9	99.1	ArrayExpress	E-MEXP-265-raw-cel-414617695	-	-	-
9.9	99.1	GSM131571	ATGE_98_B	GSE5631	AtGenExpress: Developmental series (roots)
9.7	99.1	GSM142730	CH001_ATH1_A009-Hampt-wsc_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
9.7	99.1	GSM226547	Slice5JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.6	99.1	ArrayExpress	E-MEXP-1443-raw-cel-1581869745	-	-	-
9.5	99.1	GSM131562	ATGE_93_B	GSE5631	AtGenExpress: Developmental series (roots)
9.5	99.1	ArrayExpress	E-MEXP-828-raw-cel-1156922467	-	-	-
9.4	99.1	GSM133136	S1500_24H_B	GSE5688	AtGenExpress: Response to sulfate limitation
9.3	99.1	GSM133135	S1500_24H_A	GSE5688	AtGenExpress: Response to sulfate limitation
9.2	99.1	GSM131406	AtGen_6-7522_UV-Bstress-Roots-12.0h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
9.2	99.1	ArrayExpress	E-MEXP-791-raw-cel-1122937623	-	-	-
9.1	99.1	GSM131561	ATGE_93_A	GSE5631	AtGenExpress: Developmental series (roots)
9.0	99.1	GSM131377	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
9.0	99.1	GSM131575	ATGE_99_C	GSE5631	AtGenExpress: Developmental series (roots)
9.0	99.1	GSM265474	Arabidopsis, whole roots, -Fe, 72 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
8.8	99.0	GSM75511	Col-0 6h MOCK replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
8.8	99.0	GSM75517	slr-1 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation

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