Specifically-expressed experiments

Gene ID At5g25390
Gene name SHN2 (shine2)
Functional description encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
511.6100.0ArrayExpressE-MEXP-1451-raw-cel-1585200170---
494.5100.0ArrayExpressE-MEXP-1451-raw-cel-1585200202---
364.2100.0ArrayExpressE-MEXP-1451-raw-cel-1585200234---
293.0100.0ArrayExpressE-MEXP-1451-raw-cel-1585200266---
136.799.9GSM131687ATGE_76_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
135.699.9GSM131686ATGE_76_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
124.099.9GSM131685ATGE_76_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
86.099.9GSM62705arf6 arf8_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
73.799.9GSM128731Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
45.899.8ArrayExpressE-MEXP-1451-raw-cel-1585200362---
45.599.8GSM128734Hennig_1-6_siliques-CK_021114_3_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
39.399.8ArrayExpressE-MEXP-1451-raw-cel-1585200298---
39.099.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
33.399.7GSM62701arf6/arf6 ARF8/arf8_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
32.399.7ArrayExpressE-MEXP-1451-raw-cel-1585200330---
31.599.7GSM131601ATGE_40_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
28.599.7GSM62703arf6 arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
27.599.7GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thalianaLink to GEO
26.999.7GSM131612ATGE_45_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
26.199.7GSM131600ATGE_40_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
25.699.7GSM47039hst-15 29GSE2473Small RNA biogenesis mutantsLink to GEO
25.399.6GSM47014Ler 4GSE2473Small RNA biogenesis mutantsLink to GEO
24.499.6GSM62700arf6/arf6 ARF8/arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
24.299.6GSM142604BD001_ATH1_A8-Davie-HET_repeatGSE6149Targets of the mci genes.Link to GEO
23.499.6GSM142599BD001_ATH1_A3-DAVIE-T13GSE6149Targets of the mci genes.Link to GEO
21.999.6ArrayExpressE-MEXP-265-raw-cel-414619375---
21.399.6GSM131613ATGE_45_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
21.399.6GSM47038hst-15 28GSE2473Small RNA biogenesis mutantsLink to GEO
20.899.6GSM131614ATGE_45_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
20.699.6GSM47043rdr1-1 33GSE2473Small RNA biogenesis mutantsLink to GEO
19.899.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.799.6ArrayExpressE-MEXP-265-raw-cel-414619318---
19.599.6GSM38670DSNPGSE2268Arabidopsis polysome microarrayLink to GEO
19.499.6GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
18.999.5GSM47028dcl2-1 18GSE2473Small RNA biogenesis mutantsLink to GEO
18.899.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.799.5GSM133748Turner_A-2-Turne-Mut-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
18.199.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.199.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.599.5GSM38668NSNPGSE2268Arabidopsis polysome microarrayLink to GEO
17.299.5GSM131602ATGE_40_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
16.999.5GSM142603BD001_ATH1_A7-DAVIE-HETGSE6149Targets of the mci genes.Link to GEO
16.999.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.399.5GSM47037hst-15 27GSE2473Small RNA biogenesis mutantsLink to GEO
16.199.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.499.5GSM47029dcl2-1 19GSE2473Small RNA biogenesis mutantsLink to GEO
15.499.5GSM131630ATGE_58_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.399.4GSM47022Col-0 12GSE2473Small RNA biogenesis mutantsLink to GEO
15.399.4GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.299.4GSM47021Col-0 11GSE2473Small RNA biogenesis mutantsLink to GEO
14.899.4GSM47047rdr2-1 37GSE2473Small RNA biogenesis mutantsLink to GEO
14.699.4GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.199.4GSM47032dcl3-1 22GSE2473Small RNA biogenesis mutantsLink to GEO
14.099.4GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.999.4GSM133752Turner_A-6-Turne-WT-Top2_SLDGSE5729Role of COV in vascular patterningLink to GEO
13.499.4GSM133751Turner_A-5-Turne-WT-Top1_SLDGSE5729Role of COV in vascular patterningLink to GEO
13.499.4ArrayExpressE-TABM-52-raw-cel-1583683454---
13.399.4GSM47015Ler 5GSE2473Small RNA biogenesis mutantsLink to GEO
13.399.4ArrayExpressE-MEXP-265-raw-cel-414619001---
13.399.4GSM47020Col-0 10GSE2473Small RNA biogenesis mutantsLink to GEO
13.099.4GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
13.099.4GSM62699arf6/arf6 ARF8/arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
12.899.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.699.3GSM47016Ler 6GSE2473Small RNA biogenesis mutantsLink to GEO
12.699.3GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.399.3GSM47046rdr2-1 36GSE2473Small RNA biogenesis mutantsLink to GEO
11.599.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.599.3GSM47030dcl2-1 20GSE2473Small RNA biogenesis mutantsLink to GEO
11.499.3ArrayExpressE-MEXP-285-raw-cel-440783213---
11.499.3GSM142601BD001_ATH1_A5-DAVIE-T14GSE6149Targets of the mci genes.Link to GEO
11.399.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.199.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.199.2GSM242956Steroid day 1 (day1D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
11.099.2GSM47048rdr2-1 38GSE2473Small RNA biogenesis mutantsLink to GEO
10.899.2GSM131597ATGE_39_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.799.2GSM67084Arabidopsis_Stigma01GSE3056Arabidopsis Pollination StudyLink to GEO
10.799.2GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
10.799.2GSM131598ATGE_39_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.699.2ArrayExpressE-MEXP-265-raw-cel-414618900---
10.699.2GSM47033dcl3-1 23GSE2473Small RNA biogenesis mutantsLink to GEO
10.699.2GSM67080Arabidopsis_Ovary03GSE3056Arabidopsis Pollination StudyLink to GEO
10.599.2GSM269823T6 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
10.499.2GSM62697Columbia_stemGSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
10.299.2GSM67081Arabidopsis_Ovary04GSE3056Arabidopsis Pollination StudyLink to GEO
10.199.2GSM131599ATGE_39_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.199.2ArrayExpressE-MEXP-285-raw-cel-440783152---
10.099.2GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.999.1GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.899.1GSM269817T8 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
9.899.1GSM131632ATGE_58_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.799.1GSM67078Arabidopsis_Ovary01GSE3056Arabidopsis Pollination StudyLink to GEO
9.799.1GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.799.1GSM2452370hr DEX Replicate 2GSE9702Identification of putative targets of AP3/PILink to GEO
9.699.1GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.699.1GSM131631ATGE_58_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.699.1GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
9.499.1GSM242963Steroid day 7 (day7D1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
9.499.1GSM67079Arabidopsis_Ovary02GSE3056Arabidopsis Pollination StudyLink to GEO
9.499.1GSM142602BD001_ATH1_A6-DAVIE-T14GSE6149Targets of the mci genes.Link to GEO
9.399.1GSM142597BD001_ATH1_A1-DAVIE-CONGSE6149Targets of the mci genes.Link to GEO
9.299.1GSM142598BD001_ATH1_A2-DAVIE-CONGSE6149Targets of the mci genes.Link to GEO
9.199.1GSM47011Col-0 1GSE2473Small RNA biogenesis mutantsLink to GEO
9.199.1GSM2452524hr DEX Replicate 2GSE9702Identification of putative targets of AP3/PILink to GEO
8.899.0ArrayExpressE-MEXP-1592-raw-cel-1617527000---



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