CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g24120

Gene name SIGE (SIGMA FACTOR E)

Functional description Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
77.5 99.9 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
60.5 99.8 ArrayExpress E-MEXP-557-raw-cel-879731502 - - -
60.1 99.8 GSM297382 At.StarchSD.WTSS3.SS3R1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
52.7 99.8 GSM297387 At.StarchSD.WTSS3.SS3R2L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
47.2 99.8 ArrayExpress Evans_2-2_col-WT-cold_ATH1 - - -
43.6 99.8 GSM197146 S82-2_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
43.3 99.8 GSM197141 wt_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
41.6 99.8 GSM134775 Col-0_5day_+lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
41.6 99.8 ArrayExpress Evans_2-8_35s-FAD3-cold_ATH1 - - -
40.6 99.8 ArrayExpress Evans_2-4_fab1-mut-cold_ATH1 - - -
40.4 99.8 ArrayExpress E-MEXP-1345-raw-cel-1559561259 - - -
39.2 99.8 GSM197145 S58-2_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
39.0 99.8 ArrayExpress Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1 - - -
36.6 99.7 ArrayExpress E-MEXP-550-raw-cel-871342391 - - -
34.6 99.7 GSM131170 AtGen_D-2_1-FL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
34.0 99.7 GSM197144 S15-118_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
33.9 99.7 ArrayExpress E-MEXP-557-raw-cel-879731511 - - -
33.6 99.7 GSM197143 S14-150_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
33.5 99.7 GSM297397 At.StarchSD.WTSS3.WTR2L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
32.6 99.7 ArrayExpress Evans_2-10_col-aeq-cold_ATH1 - - -
32.3 99.7 ArrayExpress E-ATMX-30-raw-cel-1513696906 - - -
31.2 99.7 GSM131304 AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
31.0 99.7 GSM131391 AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
30.6 99.7 GSM197142 aba3-1_2 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
29.8 99.7 ArrayExpress E-MEXP-1345-raw-cel-1559561289 - - -
29.2 99.7 ArrayExpress E-MEXP-557-raw-cel-879731583 - - -
29.0 99.7 GSM134782 gun1-1_5day_+lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
28.5 99.7 ArrayExpress E-MEXP-550-raw-cel-871342382 - - -
28.5 99.7 GSM268251 WT-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
28.3 99.7 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
28.0 99.7 GSM133720 Deeken_A-2-Deeke-Inf_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
24.7 99.6 GSM133407 Bramke_A1-warre-WTC GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
24.4 99.6 GSM142804 SS001_ATH1_A7-Smith-10 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
23.5 99.6 ArrayExpress E-MEXP-185-raw-cel-358911774 - - -
22.2 99.6 ArrayExpress E-MEXP-550-raw-cel-871342427 - - -
22.1 99.6 ArrayExpress E-ATMX-19-raw-cel-1375547394 - - -
21.6 99.6 GSM128718 Pieterse_1-4_Control-72h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
21.4 99.6 GSM134772 Col-0_5day_-lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
21.3 99.6 ArrayExpress E-MEXP-185-raw-cel-358911662 - - -
21.2 99.6 ArrayExpress E-MEXP-185-raw-cel-358912110 - - -
21.1 99.6 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
20.9 99.6 GSM134774 Col-0_5day_-lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
20.2 99.6 GSM133405 Bramke_A5-warre-S2C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
20.2 99.6 ArrayExpress E-MEXP-1345-raw-cel-1559561229 - - -
19.7 99.6 ArrayExpress E-MEXP-185-raw-cel-358911886 - - -
19.5 99.6 GSM38671 DSPS GSE2268 Arabidopsis polysome microarray
19.4 99.6 ArrayExpress E-ATMX-19-raw-cel-1375547530 - - -
18.9 99.5 ArrayExpress E-ATMX-19-raw-cel-1375547462 - - -
18.8 99.5 ArrayExpress E-MEXP-550-raw-cel-871342418 - - -
18.7 99.5 ArrayExpress E-ATMX-19-raw-cel-1375547496 - - -
18.7 99.5 GSM142663 NE001_ATH1_A1-Evans-w20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
18.6 99.5 GSM133399 Knight_2-1_wildtype-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
18.3 99.5 GSM142666 NE001_ATH1_A4-Evans-m20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
18.2 99.5 ArrayExpress Evans_2-6_fab2-mut-cold_ATH1 - - -
17.8 99.5 ArrayExpress E-MEXP-557-raw-cel-879731574 - - -
17.8 99.5 GSM134780 gun1-1_5day_-lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
17.7 99.5 ArrayExpress E-ATMX-19-raw-cel-1375547513 - - -
17.5 99.5 GSM134767 abi4-102_5day_-lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
17.4 99.5 GSM134779 gun1-1_5day_-lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
17.4 99.5 ArrayExpress E-MEXP-185-raw-cel-358911998 - - -
17.0 99.5 GSM134783 gun1-1_5day_+lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
16.6 99.5 ArrayExpress E-MEXP-285-raw-cel-440782938 - - -
16.3 99.5 GSM142815 SS002_ATH1_A7-smith-13h GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
16.1 99.5 ArrayExpress E-MEXP-1454-raw-cel-1585858145 - - -
16.0 99.5 GSM133722 Deeken_A-2-Deeke-Inf_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
16.0 99.5 ArrayExpress E-MEXP-1304-raw-cel-1530620453 - - -
15.7 99.5 ArrayExpress E-ATMX-19-raw-cel-1375547445 - - -
15.4 99.5 ArrayExpress E-MEXP-550-raw-cel-871342409 - - -
14.7 99.4 GSM131387 AtGen_6-7111_UV-Bstress-Shoots-0.5h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
14.6 99.4 GSM134769 abi4-102_5day_+lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
14.5 99.4 GSM131200 AtGen_D-34_3-FL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
14.2 99.4 GSM38669 NSPS GSE2268 Arabidopsis polysome microarray
14.2 99.4 GSM142772 AM002_ATH1_A7-MCCOR-GFB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
14.1 99.4 GSM142778 AM002_ATH1_A3-MCCOR-GFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
13.9 99.4 ArrayExpress E-ATMX-19-raw-cel-1375547479 - - -
13.9 99.4 ArrayExpress E-MEXP-1344-raw-cel-1559561683 - - -
13.8 99.4 ArrayExpress E-MEXP-475-raw-cel-680982485 - - -
13.8 99.4 GSM38670 DSNP GSE2268 Arabidopsis polysome microarray
13.7 99.4 ArrayExpress E-MEXP-1454-raw-cel-1585858181 - - -
13.6 99.4 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.6 99.4 GSM244445 Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
13.1 99.4 GSM149817 SLWF infested arabidopsis rosette tissue, replicate 2 GSE6516 Silverleaf whitefly 2nd instar feeding on 7-week old Arabidopsis thaliana rosette leaves
12.8 99.3 GSM131392 AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
12.5 99.3 ArrayExpress E-MEXP-475-raw-cel-680982413 - - -
12.4 99.3 GSM94011 S5 third repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
12.2 99.3 ArrayExpress E-ATMX-19-raw-cel-1375547411 - - -
11.8 99.3 GSM133403 Bramke_A3-warre-S6C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
11.6 99.3 ArrayExpress E-ATMX-33-raw-cel-1562596264 - - -
11.5 99.3 ArrayExpress E-MEXP-185-raw-cel-358911718 - - -
11.5 99.3 GSM131388 AtGen_6-7112_UV-Bstress-Shoots-0.5h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
11.3 99.3 GSM275638 Ler_60min GSE10876 Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
11.2 99.2 ArrayExpress E-MEXP-444-raw-cel-670291713 - - -
11.0 99.2 ArrayExpress E-ATMX-19-raw-cel-1375547428 - - -
10.9 99.2 ArrayExpress E-MEXP-557-raw-cel-879731547 - - -
10.6 99.2 ArrayExpress E-MEXP-285-raw-cel-440782853 - - -
10.6 99.2 ArrayExpress E-ATMX-30-raw-cel-1513696675 - - -
10.6 99.2 ArrayExpress E-MEXP-1443-raw-cel-1581869573 - - -
10.6 99.2 ArrayExpress Evans_2-1_col-WT-ambient_ATH1 - - -
10.5 99.2 ArrayExpress E-MEXP-1112-raw-cel-1590665793 - - -
10.5 99.2 GSM133728 McCormac_1-6_mutant-NFtreated_Rep2_ATH1 GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
10.5 99.2 GSM142805 SS001_ATH1_A8-Smith-11 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
10.4 99.2 ArrayExpress E-MEXP-449-raw-cel-676423218 - - -
10.4 99.2 GSM77175 04h low CO2 + light replicate A GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
10.4 99.2 GSM77178 04h low CO2 + light replicate B GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
10.4 99.2 ArrayExpress E-MEXP-550-raw-cel-871342400 - - -
10.4 99.2 GSM134777 Col-0_5day_+lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
10.3 99.2 GSM244457 Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp4 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.3 99.2 GSM134768 abi4-102_5day_-lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
10.2 99.2 GSM244459 Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep2_exp4 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.1 99.2 GSM131219 Scrase-Field_1-3_Col-0-wildtype_Rep2_ATH1 GSE5618 Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
10.1 99.2 GSM131185 AtGen_D-18_2-FL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
9.8 99.1 GSM275642 flu_60min GSE10876 Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
9.7 99.1 ArrayExpress E-MEXP-449-raw-cel-676423362 - - -
9.7 99.1 GSM94009 A1-1 third repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
9.7 99.1 ArrayExpress E-MEXP-557-raw-cel-879731538 - - -
9.6 99.1 GSM244452 Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.6 99.1 GSM187242 Col-O_HL_A GSE7743 Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High Irradiance
9.5 99.1 GSM133725 McCormac_1-3_mutant-NFtreated_Rep1_ATH1 GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
9.5 99.1 ArrayExpress E-MEXP-1112-raw-cel-1590665845 - - -
9.5 99.1 GSM131315 AtGen_6-3311_Saltstress-Shoots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
9.3 99.1 GSM134771 abi4-102_5day_+lincomycin_rep2 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
9.3 99.1 GSM142781 AM002_ATH1_A6-MCCOR-WDB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
9.1 99.1 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
9.1 99.1 ArrayExpress E-MEXP-185-raw-cel-358911606 - - -
9.1 99.1 ArrayExpress E-TABM-63-raw-cel-681137195 - - -
9.0 99.1 ArrayExpress E-MEXP-1304-raw-cel-1530620268 - - -
8.9 99.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.8 99.0 GSM131217 Scrase-Field_1-1_Col-0-wildtype_Rep1_ATH1 GSE5618 Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
8.7 99.0 GSM131292 AtGen_6-2312_Osmoticstress-Shoots-3.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
77.5	99.9	GSM297392	At.StarchSD.WTSS3.WTR1L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
60.5	99.8	ArrayExpress	E-MEXP-557-raw-cel-879731502	-	-	-
60.1	99.8	GSM297382	At.StarchSD.WTSS3.SS3R1L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
52.7	99.8	GSM297387	At.StarchSD.WTSS3.SS3R2L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
47.2	99.8	ArrayExpress	Evans_2-2_col-WT-cold_ATH1	-	-	-
43.6	99.8	GSM197146	S82-2_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
43.3	99.8	GSM197141	wt_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
41.6	99.8	GSM134775	Col-0_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
41.6	99.8	ArrayExpress	Evans_2-8_35s-FAD3-cold_ATH1	-	-	-
40.6	99.8	ArrayExpress	Evans_2-4_fab1-mut-cold_ATH1	-	-	-
40.4	99.8	ArrayExpress	E-MEXP-1345-raw-cel-1559561259	-	-	-
39.2	99.8	GSM197145	S58-2_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
39.0	99.8	ArrayExpress	Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1	-	-	-
36.6	99.7	ArrayExpress	E-MEXP-550-raw-cel-871342391	-	-	-
34.6	99.7	GSM131170	AtGen_D-2_1-FL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
34.0	99.7	GSM197144	S15-118_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
33.9	99.7	ArrayExpress	E-MEXP-557-raw-cel-879731511	-	-	-
33.6	99.7	GSM197143	S14-150_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
33.5	99.7	GSM297397	At.StarchSD.WTSS3.WTR2L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
32.6	99.7	ArrayExpress	Evans_2-10_col-aeq-cold_ATH1	-	-	-
32.3	99.7	ArrayExpress	E-ATMX-30-raw-cel-1513696906	-	-	-
31.2	99.7	GSM131304	AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
31.0	99.7	GSM131391	AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
30.6	99.7	GSM197142	aba3-1_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
29.8	99.7	ArrayExpress	E-MEXP-1345-raw-cel-1559561289	-	-	-
29.2	99.7	ArrayExpress	E-MEXP-557-raw-cel-879731583	-	-	-
29.0	99.7	GSM134782	gun1-1_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
28.5	99.7	ArrayExpress	E-MEXP-550-raw-cel-871342382	-	-	-
28.5	99.7	GSM268251	WT-drought-2, biological rep 2	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
28.3	99.7	GSM131303	AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
28.0	99.7	GSM133720	Deeken_A-2-Deeke-Inf_SLD_REP1	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
24.7	99.6	GSM133407	Bramke_A1-warre-WTC	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
24.4	99.6	GSM142804	SS001_ATH1_A7-Smith-10	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
23.5	99.6	ArrayExpress	E-MEXP-185-raw-cel-358911774	-	-	-
22.2	99.6	ArrayExpress	E-MEXP-550-raw-cel-871342427	-	-	-
22.1	99.6	ArrayExpress	E-ATMX-19-raw-cel-1375547394	-	-	-
21.6	99.6	GSM128718	Pieterse_1-4_Control-72h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
21.4	99.6	GSM134772	Col-0_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
21.3	99.6	ArrayExpress	E-MEXP-185-raw-cel-358911662	-	-	-
21.2	99.6	ArrayExpress	E-MEXP-185-raw-cel-358912110	-	-	-
21.1	99.6	GSM268249	dor-drought-2, biological rep 2	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
20.9	99.6	GSM134774	Col-0_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
20.2	99.6	GSM133405	Bramke_A5-warre-S2C	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
20.2	99.6	ArrayExpress	E-MEXP-1345-raw-cel-1559561229	-	-	-
19.7	99.6	ArrayExpress	E-MEXP-185-raw-cel-358911886	-	-	-
19.5	99.6	GSM38671	DSPS	GSE2268	Arabidopsis polysome microarray
19.4	99.6	ArrayExpress	E-ATMX-19-raw-cel-1375547530	-	-	-
18.9	99.5	ArrayExpress	E-ATMX-19-raw-cel-1375547462	-	-	-
18.8	99.5	ArrayExpress	E-MEXP-550-raw-cel-871342418	-	-	-
18.7	99.5	ArrayExpress	E-ATMX-19-raw-cel-1375547496	-	-	-
18.7	99.5	GSM142663	NE001_ATH1_A1-Evans-w20	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
18.6	99.5	GSM133399	Knight_2-1_wildtype-lt_Rep1_ATH1	GSE5710	Dark-induced gene expression in sfr6
18.3	99.5	GSM142666	NE001_ATH1_A4-Evans-m20	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
18.2	99.5	ArrayExpress	Evans_2-6_fab2-mut-cold_ATH1	-	-	-
17.8	99.5	ArrayExpress	E-MEXP-557-raw-cel-879731574	-	-	-
17.8	99.5	GSM134780	gun1-1_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
17.7	99.5	ArrayExpress	E-ATMX-19-raw-cel-1375547513	-	-	-
17.5	99.5	GSM134767	abi4-102_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
17.4	99.5	GSM134779	gun1-1_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
17.4	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911998	-	-	-
17.0	99.5	GSM134783	gun1-1_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
16.6	99.5	ArrayExpress	E-MEXP-285-raw-cel-440782938	-	-	-
16.3	99.5	GSM142815	SS002_ATH1_A7-smith-13h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
16.1	99.5	ArrayExpress	E-MEXP-1454-raw-cel-1585858145	-	-	-
16.0	99.5	GSM133722	Deeken_A-2-Deeke-Inf_SLD_REP2	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
16.0	99.5	ArrayExpress	E-MEXP-1304-raw-cel-1530620453	-	-	-
15.7	99.5	ArrayExpress	E-ATMX-19-raw-cel-1375547445	-	-	-
15.4	99.5	ArrayExpress	E-MEXP-550-raw-cel-871342409	-	-	-
14.7	99.4	GSM131387	AtGen_6-7111_UV-Bstress-Shoots-0.5h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
14.6	99.4	GSM134769	abi4-102_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
14.5	99.4	GSM131200	AtGen_D-34_3-FL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
14.2	99.4	GSM38669	NSPS	GSE2268	Arabidopsis polysome microarray
14.2	99.4	GSM142772	AM002_ATH1_A7-MCCOR-GFB	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
14.1	99.4	GSM142778	AM002_ATH1_A3-MCCOR-GFA	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
13.9	99.4	ArrayExpress	E-ATMX-19-raw-cel-1375547479	-	-	-
13.9	99.4	ArrayExpress	E-MEXP-1344-raw-cel-1559561683	-	-	-
13.8	99.4	ArrayExpress	E-MEXP-475-raw-cel-680982485	-	-	-
13.8	99.4	GSM38670	DSNP	GSE2268	Arabidopsis polysome microarray
13.7	99.4	ArrayExpress	E-MEXP-1454-raw-cel-1585858181	-	-	-
13.6	99.4	GSM269821	WT leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.6	99.4	GSM244445	Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
13.1	99.4	GSM149817	SLWF infested arabidopsis rosette tissue, replicate 2	GSE6516	Silverleaf whitefly 2nd instar feeding on 7-week old Arabidopsis thaliana rosette leaves
12.8	99.3	GSM131392	AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
12.5	99.3	ArrayExpress	E-MEXP-475-raw-cel-680982413	-	-	-
12.4	99.3	GSM94011	S5 third repeat	GSE4113	Arabidopsis plants with altered levels of alternative oxidase
12.2	99.3	ArrayExpress	E-ATMX-19-raw-cel-1375547411	-	-	-
11.8	99.3	GSM133403	Bramke_A3-warre-S6C	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
11.6	99.3	ArrayExpress	E-ATMX-33-raw-cel-1562596264	-	-	-
11.5	99.3	ArrayExpress	E-MEXP-185-raw-cel-358911718	-	-	-
11.5	99.3	GSM131388	AtGen_6-7112_UV-Bstress-Shoots-0.5h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
11.3	99.3	GSM275638	Ler_60min	GSE10876	Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
11.2	99.2	ArrayExpress	E-MEXP-444-raw-cel-670291713	-	-	-
11.0	99.2	ArrayExpress	E-ATMX-19-raw-cel-1375547428	-	-	-
10.9	99.2	ArrayExpress	E-MEXP-557-raw-cel-879731547	-	-	-
10.6	99.2	ArrayExpress	E-MEXP-285-raw-cel-440782853	-	-	-
10.6	99.2	ArrayExpress	E-ATMX-30-raw-cel-1513696675	-	-	-
10.6	99.2	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
10.6	99.2	ArrayExpress	Evans_2-1_col-WT-ambient_ATH1	-	-	-
10.5	99.2	ArrayExpress	E-MEXP-1112-raw-cel-1590665793	-	-	-
10.5	99.2	GSM133728	McCormac_1-6_mutant-NFtreated_Rep2_ATH1	GSE5726	Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
10.5	99.2	GSM142805	SS001_ATH1_A8-Smith-11	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
10.4	99.2	ArrayExpress	E-MEXP-449-raw-cel-676423218	-	-	-
10.4	99.2	GSM77175	04h low CO2 + light replicate A	GSE3423	Carbon fixation (endogenous sugar) and light-dependent gene expression
10.4	99.2	GSM77178	04h low CO2 + light replicate B	GSE3423	Carbon fixation (endogenous sugar) and light-dependent gene expression
10.4	99.2	ArrayExpress	E-MEXP-550-raw-cel-871342400	-	-	-
10.4	99.2	GSM134777	Col-0_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
10.3	99.2	GSM244457	Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp4	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.3	99.2	GSM134768	abi4-102_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
10.2	99.2	GSM244459	Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep2_exp4	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.1	99.2	GSM131219	Scrase-Field_1-3_Col-0-wildtype_Rep2_ATH1	GSE5618	Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
10.1	99.2	GSM131185	AtGen_D-18_2-FL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.8	99.1	GSM275642	flu_60min	GSE10876	Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
9.7	99.1	ArrayExpress	E-MEXP-449-raw-cel-676423362	-	-	-
9.7	99.1	GSM94009	A1-1 third repeat	GSE4113	Arabidopsis plants with altered levels of alternative oxidase
9.7	99.1	ArrayExpress	E-MEXP-557-raw-cel-879731538	-	-	-
9.6	99.1	GSM244452	Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.6	99.1	GSM187242	Col-O_HL_A	GSE7743	Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High Irradiance
9.5	99.1	GSM133725	McCormac_1-3_mutant-NFtreated_Rep1_ATH1	GSE5726	Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
9.5	99.1	ArrayExpress	E-MEXP-1112-raw-cel-1590665845	-	-	-
9.5	99.1	GSM131315	AtGen_6-3311_Saltstress-Shoots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
9.3	99.1	GSM134771	abi4-102_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
9.3	99.1	GSM142781	AM002_ATH1_A6-MCCOR-WDB	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
9.1	99.1	GSM38668	NSNP	GSE2268	Arabidopsis polysome microarray
9.1	99.1	ArrayExpress	E-MEXP-185-raw-cel-358911606	-	-	-
9.1	99.1	ArrayExpress	E-TABM-63-raw-cel-681137195	-	-	-
9.0	99.1	ArrayExpress	E-MEXP-1304-raw-cel-1530620268	-	-	-
8.9	99.0	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.8	99.0	GSM131217	Scrase-Field_1-1_Col-0-wildtype_Rep1_ATH1	GSE5618	Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
8.7	99.0	GSM131292	AtGen_6-2312_Osmoticstress-Shoots-3.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At5g24120
Gene name	SIGE (SIGMA FACTOR E)
Functional description	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.