Specifically-expressed experiments

Gene ID	At5g23220
Gene name	NIC3 (NICOTINAMIDASE 3)
Functional description	F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFP

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
188.4	100.0	GSM184914	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
98.1	99.9	GSM131282	AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
83.2	99.9	GSM184913	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
63.8	99.8	GSM142755	MJ001_ATH1_A6-jones-RH-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
58.2	99.8	GSM131281	AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
56.1	99.8	GSM131175	AtGen_D-7_1-UL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
55.8	99.8	ArrayExpress	E-MEXP-1784-raw-cel-1661573018	-	-	-
54.6	99.8	GSM133973	Birnbaum_1-3_src5-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
51.2	99.8	GSM184915	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
50.6	99.8	ArrayExpress	E-MEXP-1784-raw-cel-1661572965	-	-	-
47.2	99.8	ArrayExpress	E-MEXP-1784-raw-cel-1661572952	-	-	-
46.5	99.8	ArrayExpress	E-MEXP-1784-raw-cel-1661572992	-	-	-
45.7	99.8	ArrayExpress	E-MEXP-1784-raw-cel-1661572978	-	-	-
44.1	99.8	ArrayExpress	E-MEXP-1304-raw-cel-1530617935	-	-	-
43.4	99.8	ArrayExpress	E-MEXP-1784-raw-cel-1661573005	-	-	-
40.0	99.8	GSM179973	Arabidopsis roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
39.6	99.8	GSM184932	Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
38.4	99.8	GSM179975	Arabidopsis ein2 mutant roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
38.3	99.8	GSM142753	MJ001_ATH1_A4-jones-rh2	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
38.0	99.8	GSM179976	Arabidopsis ein2 mutant roots, mock treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
36.9	99.7	ArrayExpress	E-MEXP-1784-raw-cel-1661573160	-	-	-
36.5	99.7	GSM131181	AtGen_D-13_1-BS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
36.3	99.7	GSM179974	Arabidopsis roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
35.5	99.7	GSM179978	Arabidopsis ein2 mutant roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
35.3	99.7	ArrayExpress	E-MEXP-1784-raw-cel-1661573186	-	-	-
35.3	99.7	GSM179977	Arabidopsis ein2 mutant roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
34.5	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618203	-	-	-
34.0	99.7	GSM131173	AtGen_D-5_1-BL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
33.9	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530617900	-	-	-
33.6	99.7	GSM184845	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
32.6	99.7	GSM142752	MJ001_ATH1_A3-jones-rh1	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
31.5	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618003	-	-	-
31.2	99.7	ArrayExpress	E-MEXP-1784-raw-cel-1661573173	-	-	-
31.1	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530617971	-	-	-
30.9	99.7	GSM184511	Pericycle root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.9	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618136	-	-	-
30.8	99.7	GSM131205	AtGen_D-39_3-UL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
30.5	99.7	GSM179971	Arabidopsis roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
30.4	99.7	GSM179972	Arabidopsis roots, mock treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
30.0	99.7	GSM142673	SF001_ATH1_A3-Fille-ANGR4-12	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
29.9	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618235	-	-	-
27.3	99.7	GSM131184	AtGen_D-16_1-WS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
26.9	99.7	GSM184843	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
25.7	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618171	-	-	-
24.2	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530618068	-	-	-
23.9	99.6	GSM131182	AtGen_D-14_1-AS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
23.7	99.6	ArrayExpress	E-MEXP-1784-raw-cel-1661573138	-	-	-
23.6	99.6	GSM142674	SF002_ATH1_A5-Fille-WTnodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
23.4	99.6	GSM231196	wild-type at T0.5, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
23.3	99.6	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
22.8	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530618275	-	-	-
21.3	99.6	GSM131203	AtGen_D-37_3-BL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
21.1	99.6	GSM231202	chl1 at T0.5, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
21.0	99.6	GSM131172	AtGen_D-4_1-RL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
21.0	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530618033	-	-	-
20.9	99.6	GSM142670	SF002_ATH1_A8-Fille-ANGR4-12+dex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
20.8	99.6	GSM142672	SF001_ATH1_A2-Fille-WT-+dex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
20.6	99.6	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.5	99.6	GSM131176	AtGen_D-8_1-WL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.3	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530618104	-	-	-
20.2	99.6	GSM131211	AtGen_D-45_3-BS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
20.0	99.6	ArrayExpress	E-MEXP-1784-raw-cel-1661573074	-	-	-
19.9	99.6	GSM131277	AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
19.6	99.6	GSM184844	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
19.4	99.6	ArrayExpress	E-MEXP-1784-raw-cel-1661573096	-	-	-
19.1	99.6	GSM131290	AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
18.9	99.5	GSM184837	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7	GSE7639	Expression analysis of root developmental zones after treatment with salt
18.7	99.5	ArrayExpress	E-MEXP-1784-raw-cel-1661572909	-	-	-
18.6	99.5	GSM159300	CCA1-34_dark_early_rep1	GSE6906	Rhythmic growth explained by coincidence between internal and external cues
18.6	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.3	99.5	GSM131170	AtGen_D-2_1-FL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
18.3	99.5	GSM142754	MJ001_ATH1_A5-jones-WT-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
17.7	99.5	GSM218592	Whole roots 3.5hr KCl control treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.2	99.5	GSM131195	AtGen_D-29_2-BS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
17.2	99.5	GSM131179	AtGen_D-11_1-PS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
17.0	99.5	GSM131214	AtGen_D-48_3-WS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
16.9	99.5	GSM184838	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8	GSE7639	Expression analysis of root developmental zones after treatment with salt
16.8	99.5	GSM131190	AtGen_D-23_2-UL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
16.5	99.5	GSM131188	AtGen_D-21_2-BL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
16.3	99.5	GSM131293	AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
16.3	99.5	GSM131171	AtGen_D-3_1-PL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
16.2	99.5	GSM231198	wild-type at T0.5, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
16.0	99.5	GSM131180	AtGen_D-12_1-RS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
15.7	99.5	GSM131178	AtGen_D-10_1-FS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
15.4	99.5	GSM131177	AtGen_D-9_1-DS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
15.2	99.4	GSM218591	Whole roots 3.5hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.6	99.4	GSM131169	AtGen_D-1_1-DL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
14.4	99.4	ArrayExpress	E-MEXP-1468-raw-cel-1591138985	-	-	-
14.3	99.4	GSM179963	Arabidopsis aux1 mutant roots, air treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
14.2	99.4	GSM131185	AtGen_D-18_2-FL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
14.0	99.4	GSM231204	chl1 at T0.5, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
13.9	99.4	ArrayExpress	E-MEXP-1784-raw-cel-1661573032	-	-	-
13.5	99.4	GSM157315	Hammond_3-5_Potassium-starved-root_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
13.0	99.4	GSM184560	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.8	99.3	ArrayExpress	E-MEXP-1784-raw-cel-1661573117	-	-	-
12.7	99.3	GSM231199	chl1 at T0, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
12.5	99.3	GSM131213	AtGen_D-47_3-US_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
12.4	99.3	GSM231203	chl1 at T0.5, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
12.4	99.3	ArrayExpress	E-MEXP-1784-raw-cel-1661572888	-	-	-
12.4	99.3	GSM131278	AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
12.3	99.3	GSM218289	At_NaCl_wermyb23-1	GSE8787	Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterning
12.3	99.3	GSM131183	AtGen_D-15_1-US_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
12.0	99.3	ArrayExpress	E-MEXP-1310-raw-cel-1534419254	-	-	-
11.8	99.3	GSM131196	AtGen_D-30_2-AS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
11.6	99.3	GSM142784	HO001_ATH1_A1-Okamo-gpal-ABA	GSE6171	Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABA
11.3	99.3	GSM131212	AtGen_D-46_3-AS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
11.3	99.3	ArrayExpress	E-MEXP-1310-raw-cel-1534419208	-	-	-
11.2	99.2	GSM231201	chl1 at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.2	99.2	GSM131210	AtGen_D-44_3-RS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
11.0	99.2	GSM184538	Whole roots 2hr KCl control treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM131204	AtGen_D-38_3-AL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.9	99.2	GSM179958	Arabidopsis roots, air treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.8	99.2	GSM231197	wild-type at T0.5, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
10.6	99.2	GSM179967	Arabidopsis aux1 mutant roots, air treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.5	99.2	GSM231193	wild-type at T0, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
10.4	99.2	GSM319206	35S-MIF1 line #124, dark grown, replicate2	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
10.3	99.2	GSM131206	AtGen_D-40_3-WL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.3	99.2	GSM131845	Pracharoenwattana_1-2_mdhB_Rep2_ATH1	GSE5641	Peroxisomal mdh mutant
10.2	99.2	GSM291101	root - 21% oxygen - 2h - E	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.2	99.2	ArrayExpress	E-MEXP-1112-raw-cel-1590665533	-	-	-
10.1	99.2	GSM218595	Whole roots 3.5hr KNO3 treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.1	99.2	ArrayExpress	E-MEXP-1310-raw-cel-1534419293	-	-	-
10.0	99.2	GSM179959	Arabidopsis roots, air treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.0	99.2	GSM142671	SF001_ATH1_A1-Fille-WT-nodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
10.0	99.2	GSM131209	AtGen_D-43_3-PS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.8	99.1	GSM131207	AtGen_D-41_3-DS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.8	99.1	GSM184536	Protoplasted root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.8	99.1	ArrayExpress	E-MEXP-1468-raw-cel-1591139018	-	-	-
9.6	99.1	GSM290828	root - 04% oxygen - 48h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.6	99.1	GSM184482	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.4	99.1	ArrayExpress	E-MEXP-1784-raw-cel-1661572930	-	-	-
9.4	99.1	GSM133988	Birnbaum_1-18_wol-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.4	99.1	GSM131194	AtGen_D-28_2-RS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.3	99.1	GSM157327	Hammond_3-11_Potassium-starved-root_Rep2_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
9.3	99.1	GSM142669	SF002_ATH1_A7-Fille-ANGR4-12nodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
9.3	99.1	GSM131187	AtGen_D-20_2-RL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.3	99.1	GSM133993	Birnbaum_1-26_J0571-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.2	99.1	GSM131197	AtGen_D-31_2-US_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.2	99.1	GSM252672	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep2	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
9.2	99.1	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.1	99.1	GSM131202	AtGen_D-36_3-RL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.1	99.1	GSM252673	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep3	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
9.1	99.1	GSM142675	SF002_ATH1_A6-Fille-WT+dex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
8.9	99.0	ArrayExpress	E-MEXP-635-raw-cel-912819840	-	-	-
8.9	99.0	GSM131844	Pracharoenwattana_1-1_mdhA_Rep1_ATH1	GSE5641	Peroxisomal mdh mutant
8.8	99.0	GSM184918	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
8.8	99.0	GSM184559	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.7	99.0	GSM184634	Arabidopsis, root cells, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
8.7	99.0	ArrayExpress	E-MEXP-722-raw-cel-1062243516	-	-	-
8.7	99.0	GSM133971	Birnbaum_1-1_src5-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
8.6	99.0	GSM218589	Protoplasted root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.6	99.0	GSM184535	Protoplasted root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root

Back to the CoP portal site

Back to the KAGIANA project homepage