CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g17420

Gene name IRX3 (IRREGULAR XYLEM 3)

Functional description Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
324.3 100.0 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
315.0 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
224.3 100.0 ArrayExpress E-MEXP-265-raw-cel-414618693 - - -
220.1 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
218.9 100.0 ArrayExpress E-MEXP-265-raw-cel-414618585 - - -
207.3 100.0 ArrayExpress E-MEXP-265-raw-cel-414618394 - - -
200.5 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
199.9 100.0 ArrayExpress E-MEXP-265-raw-cel-414618491 - - -
182.3 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
169.7 100.0 ArrayExpress E-MEXP-265-raw-cel-414618291 - - -
162.9 99.9 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
142.1 99.9 ArrayExpress E-MEXP-265-raw-cel-414618796 - - -
139.6 99.9 ArrayExpress E-MEXP-265-raw-cel-414617890 - - -
126.8 99.9 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
125.4 99.9 ArrayExpress E-MEXP-265-raw-cel-414617783 - - -
121.2 99.9 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
113.4 99.9 ArrayExpress E-MEXP-265-raw-cel-414617695 - - -
96.2 99.9 GSM133750 Turner_A-4-Turne-Mut-Base2_SLD GSE5729 Role of COV in vascular patterning
94.7 99.9 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
93.9 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
89.5 99.9 GSM27362 WT Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
77.1 99.9 GSM133749 Turner_A-3-Turne-Mut-Base1_SLD GSE5729 Role of COV in vascular patterning
54.2 99.8 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
53.6 99.8 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
52.3 99.8 GSM128786 Somerville_1-9_stem-GC8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
50.7 99.8 GSM128785 Somerville_1-8_stem-GC7_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
49.4 99.8 GSM131659 ATGE_28_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
48.5 99.8 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
46.0 99.8 GSM131660 ATGE_28_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
45.7 99.8 ArrayExpress E-MEXP-1451-raw-cel-1585200362 - - -
41.6 99.8 GSM131658 ATGE_28_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
41.1 99.8 GSM27366 lec1-1 Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
39.8 99.8 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
39.2 99.8 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.7 99.6 ArrayExpress E-MEXP-265-raw-cel-414619106 - - -
23.8 99.6 GSM128788 Somerville_1-11_stem-GH8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
23.5 99.6 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
22.5 99.6 GSM128787 Somerville_1-10_stem-GH7_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
19.8 99.6 ArrayExpress E-MEXP-1451-raw-cel-1585200330 - - -
17.2 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.9 99.4 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
13.5 99.4 GSM131690 ATGE_77_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
13.2 99.4 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.2 99.3 GSM142657 MC002_ATH1_A12.2-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.6 99.3 ArrayExpress E-MEXP-1451-raw-cel-1585200298 - - -
11.4 99.3 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
10.8 99.2 GSM142656 MC002_ATH1_A12.1-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.3 99.2 ArrayExpress E-MEXP-265-raw-cel-414619001 - - -
10.0 99.2 GSM142658 MC002_ATH1_A12.3-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.8 99.1 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.3 99.1 ArrayExpress E-MEXP-285-raw-cel-440783213 - - -
9.3 99.1 GSM131688 ATGE_77_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.2 99.1 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.2 99.1 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
8.9 99.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
8.7 99.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
324.3	100.0	GSM133754	Turner_A-8-Turne-WT-Base2_SLD	GSE5729	Role of COV in vascular patterning
315.0	100.0	GSM133753	Turner_A-7-Turne-WT-Base1_SLD	GSE5729	Role of COV in vascular patterning
224.3	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618693	-	-	-
220.1	100.0	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
218.9	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618585	-	-	-
207.3	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618394	-	-	-
200.5	100.0	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
199.9	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618491	-	-	-
182.3	100.0	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
169.7	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618291	-	-	-
162.9	99.9	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
142.1	99.9	ArrayExpress	E-MEXP-265-raw-cel-414618796	-	-	-
139.6	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617890	-	-	-
126.8	99.9	GSM133963	Fukuda_1-8_6B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
125.4	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617783	-	-	-
121.2	99.9	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
113.4	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617695	-	-	-
96.2	99.9	GSM133750	Turner_A-4-Turne-Mut-Base2_SLD	GSE5729	Role of COV in vascular patterning
94.7	99.9	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
93.9	99.9	GSM133961	Fukuda_1-6_4B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
89.5	99.9	GSM27362	WT Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
77.1	99.9	GSM133749	Turner_A-3-Turne-Mut-Base1_SLD	GSE5729	Role of COV in vascular patterning
54.2	99.8	GSM133960	Fukuda_1-5_4A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
53.6	99.8	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
52.3	99.8	GSM128786	Somerville_1-9_stem-GC8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
50.7	99.8	GSM128785	Somerville_1-8_stem-GC7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
49.4	99.8	GSM131659	ATGE_28_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
48.5	99.8	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
46.0	99.8	GSM131660	ATGE_28_C2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
45.7	99.8	ArrayExpress	E-MEXP-1451-raw-cel-1585200362	-	-	-
41.6	99.8	GSM131658	ATGE_28_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
41.1	99.8	GSM27366	lec1-1 Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
39.8	99.8	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
39.2	99.8	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.7	99.6	ArrayExpress	E-MEXP-265-raw-cel-414619106	-	-	-
23.8	99.6	GSM128788	Somerville_1-11_stem-GH8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
23.5	99.6	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
22.5	99.6	GSM128787	Somerville_1-10_stem-GH7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
19.8	99.6	ArrayExpress	E-MEXP-1451-raw-cel-1585200330	-	-	-
17.2	99.5	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.9	99.4	GSM131689	ATGE_77_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
13.5	99.4	GSM131690	ATGE_77_F	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
13.2	99.4	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.2	99.3	GSM142657	MC002_ATH1_A12.2-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.6	99.3	ArrayExpress	E-MEXP-1451-raw-cel-1585200298	-	-	-
11.4	99.3	GSM184920	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
10.8	99.2	GSM142656	MC002_ATH1_A12.1-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.3	99.2	ArrayExpress	E-MEXP-265-raw-cel-414619001	-	-	-
10.0	99.2	GSM142658	MC002_ATH1_A12.3-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.8	99.1	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.3	99.1	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
9.3	99.1	GSM131688	ATGE_77_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.2	99.1	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.2	99.1	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
8.9	99.0	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
8.7	99.0	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root

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Gene ID	At5g17420
Gene name	IRX3 (IRREGULAR XYLEM 3)
Functional description	Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).

Specifically-expressed experiments

Gene ID At5g17420 Gene name IRX3 (IRREGULAR XYLEM 3) Functional description Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).

Gene ID At5g17420

Gene name IRX3 (IRREGULAR XYLEM 3)

Functional description Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).